Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01724 ATGGCTGAGGGTTTTGAACATTACCATATCCCACAACAAAGCAGAAGAGATAAGTTAAGAATTCTGGGTCAGACCCCAACGGGTTTTGTTGAATCTTCCCATAATACCCTTCATCCTGGTTGTGCAGCTTTACCTTCTCTCTATGATCCTTCTCTGATTTCCTCTGATTTGTTAGCTTGTGCTAACCAACAAGGTCACGGCTTTCATAGTAACCACAACAACGTTAACGTTAACCCTCTTTCTGCTACCAACAACGAACCTTGTAAAGGTGGTTCTGTGAAGGAAGAAGGTTCAAATTTGATGATGAGATTTGCAGGAACAGTAGGAGGGGTTGTGAATGGTTCTTCTTCTTCTTCAACATCTTCGGTTTCTCATCACCATGCTTACTTAGATCCTGAATCGTCTTTGCATATGAGCCCAGGTGCTGCTGGTGCTGCAATTCAAGTTATTAACAGTAACCCTTTTCTTTATCAACCACAGAGTCTTCAGAACCTTCGAGAATTTGACCAGAGCTACAATAATGGAAGTGAGATAATGGTGTTCAAGCCTGAACCTTTATCTTTGTCTTTGTCATCCCATAACAGCACTCACCATGAAATGAATCTTCAGCGATATGGGTCTGTTATTTATAGTGATAAAGTTGGTGGTGGTGGTGGTGGGTGTGTGGTTCCCGGTTTGGTTGGAGGAGGGAGTGGTTCTTCTGCCTCGAATGAAGTTTCGAGAAACTCAGTTCCACTGGGACCATTTACAGGTTATGCCTCGGTATTGAAAGGATCGAGGTTCTTGAAGCCTGCACAACAATTATTGGAAGAGCTATGTGATGTTGGGATTCGTGGAGTTTATGGTGAGAAAATCACTGCTGATGCATCTTTAATGGAAACTCCTTCAGAGAGTTTAAGTGCTAGTGGAATTGGTGTGGATGATCCACTTATTGGAGATGGGAATCATGAGGGTAGCAAGAAGAAGTCCAGGTTATTAACCATGCTTGATGAGGTTTACAGGAGGTACAGACAATACTATCAACAGATCCATGCAGTAGTTACTTCATTTGAGTATGTTGCTGGCCTTGGTAATGCAGCCCCATATGCAAGTTTGGCTATAAATGCCATGTCCAAACATTTTAGATACTTAAAGAATGCAATTACTGACCAGCTTCAGTTTATTAGCAAGGCTCATTTTCAGATAAGCAATAATAGGAAGGATGAATCTCCAAGGTTTCACAACACTGATAGAGGCCCTTACAGCCAAAGGCCAGGCTTTCTAGAGCACCAACAACCTGTTTGGCGACCTCAAAGAGGACTCCCTGAGCGTGCTGTGAGTGTCCTTCGGGCATGGTTGTTTGAACACTTCCTCCATCCTTATCCTACTGATACGGACAAGCTAATGTTAGCTAAACAAACTGGTTTATCTCGAAACCAGGTTTCTAATTGGTTTATCAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAGGAAATACACATGCTTGAATCACAACAAGCTCAAAAGAAATCACAAAGGGAAGAACATGGTAGGAACAATTTGAGTGATCATTTACCTTCAGATAACATTCCTGAGAATCCATCTACCACAATGGATAAGTTTCAGGATGTAACTTACAGACGCAGTAGAAATGAACTTCCTAATATGCAAGCGAGGAATCAAGAACAACAACTGAATCAGCAGACTAACACAAGCAACCAGCAAGTGAGTGCAGTTGGAGTGAGCATGGGGAATGGTGCAAACAATGGTGTTTCTCTAACACTTGGTCTTCATCAAAATCATGGAATTGGGTTATCTGAACCCTTTGGCATGAGTGCAGCACATCGTTTTGGTCTTGCACTTCAACCTCATGAGGGCTATGTTACAAGTGGCTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATAGGAGGGCAACTTTTGCATGACTTTGTAGGCTGA 1947 0.4217 MAEGFEHYHIPQQSRRDKLRILGQTPTGFVESSHNTLHPGCAALPSLYDPSLISSDLLACANQQGHGFHSNHNNVNVNPLSATNNEPCKGGSVKEEGSNLMMRFAGTVGGVVNGSSSSSTSSVSHHHAYLDPESSLHMSPGAAGAAIQVINSNPFLYQPQSLQNLREFDQSYNNGSEIMVFKPEPLSLSLSSHNSTHHEMNLQRYGSVIYSDKVGGGGGGCVVPGLVGGGSGSSASNEVSRNSVPLGPFTGYASVLKGSRFLKPAQQLLEELCDVGIRGVYGEKITADASLMETPSESLSASGIGVDDPLIGDGNHEGSKKKSRLLTMLDEVYRRYRQYYQQIHAVVTSFEYVAGLGNAAPYASLAINAMSKHFRYLKNAITDQLQFISKAHFQISNNRKDESPRFHNTDRGPYSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQAQKKSQREEHGRNNLSDHLPSDNIPENPSTTMDKFQDVTYRRSRNELPNMQARNQEQQLNQQTNTSNQQVSAVGVSMGNGANNGVSLTLGLHQNHGIGLSEPFGMSAAHRFGLALQPHEGYVTSGFESQNRHFGRDVIGGQLLHDFVG. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01724 648 Pfam Associated with HOX 255 382 IPR006563 -
Seca1g01724 648 SMART HOX_1 428 492 IPR001356 GO:0003677
Seca1g01724 648 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 136 511 - -
Seca1g01724 648 MobiDBLite consensus disorder prediction 400 419 - -
Seca1g01724 648 MobiDBLite consensus disorder prediction 497 535 - -
Seca1g01724 648 MobiDBLite consensus disorder prediction 517 535 - -
Seca1g01724 648 Gene3D - 431 493 - -
Seca1g01724 648 ProSiteProfiles 'Homeobox' domain profile. 425 488 IPR001356 GO:0003677
Seca1g01724 648 MobiDBLite consensus disorder prediction 497 516 - -
Seca1g01724 648 Pfam Homeobox KN domain 445 484 IPR008422 GO:0003677|GO:0006355
Seca1g01724 648 FunFam BEL1-like homeodomain protein 9 431 493 - -
Seca1g01724 648 SUPERFAMILY Homeodomain-like 430 495 IPR009057 -
Seca1g01724 648 CDD homeodomain 428 489 IPR001356 GO:0003677
Seca1g01724 648 SMART prehox3 250 383 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01724 Seca-Chr1 29954816 29959821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01724 169 648 Homeobox Transcription Factor Family AT5G02030 48.555 7.70e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca1g01724 POX 6.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01724 - - vun:114185080 737.643