Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01711 ATGTCTGCAAGTGAGGAAGAGGTGAAGCTTTTCGGATCTGTGGGAAGCCCATTTGTCATAAGGGTTCAGATTGCTCTCAAATTGAAGGGAATTCAATACAATTACCAAGAAGAAAAATTGGGCTACTTGAGTGATGCGCTTCTCAAATACAACCCTGTTTACAAGATGGTTCCTGTGTTTCTTCACAATGGGAATCCCATATCAGAGTCCCTTGTGATTCTTGAGTACATCGATGAGACCTGGAAAAACAACCCCATCTTGCCTTCTGAACCTTACCAAAAAGCCATGGCTCGTTTCTGGGCCAAGTTCATAGATGATAAGTGTGTGGCTGCTGCATGGAAATCTGTTTTTATTGTTGATGAGGAACAGCGTGAGAAGGCTCGTGAAGAATTATTTGGGGCTCTGCAGTTTCTTGAGAATGAGCTGAAGGATAAGTTCTTTGGAGGAGAGGAGTTTGGCTTTGTGGACATTGCTGCTCTCTTCATCCCTTTATTTCAAGAAGTAGCTGAGCTGCAGTTATTCACAAGTGAGAAATTTCCCAAGCTATATAAATGGAGCCAAGAATTTTACAACCATCCAGTTGTCAAAGAAATTATGCCTTCTAAAGATCAACTCTTTGGCTATTTCAAAGCTCGTGCAGCATCCATTGCTGCTTCACAAAAATAG 666 0.4174 MSASEEEVKLFGSVGSPFVIRVQIALKLKGIQYNYQEEKLGYLSDALLKYNPVYKMVPVFLHNGNPISESLVILEYIDETWKNNPILPSEPYQKAMARFWAKFIDDKCVAAAWKSVFIVDEEQREKAREELFGALQFLENELKDKFFGGEEFGFVDIAALFIPLFQEVAELQLFTSEKFPKLYKWSQEFYNHPVVKEIMPSKDQLFGYFKARAASIAASQK. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01711 221 CDD GST_C_Tau 91 212 IPR045074 GO:0004364|GO:0006749
Seca1g01711 221 Pfam Glutathione S-transferase, C-terminal domain 119 193 IPR004046 -
Seca1g01711 221 CDD GST_N_Tau 8 81 - -
Seca1g01711 221 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 12 205 IPR045073 -
Seca1g01711 221 FunFam Glutathione S-transferase GSTU6 3 87 - -
Seca1g01711 221 Pfam Glutathione S-transferase, N-terminal domain 7 79 IPR004045 -
Seca1g01711 221 SFLD Main.3: Omega- and Tau-like 5 220 IPR045073 -
Seca1g01711 221 Gene3D - 90 220 - -
Seca1g01711 221 SUPERFAMILY GST C-terminal domain-like 79 213 IPR036282 -
Seca1g01711 221 SUPERFAMILY Thioredoxin-like 8 108 IPR036249 -
Seca1g01711 221 Gene3D Glutaredoxin 1 89 - -
Seca1g01711 221 FunFam Tau class glutathione S-transferase 87 219 - -
Seca1g01711 221 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 209 IPR010987 -
Seca1g01711 221 SFLD Main (cytGST) 5 220 - -
Seca1g01711 221 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01711 Seca-Chr1 29530394 29533078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01711 5 219 Glutathione S-transferase Gene Family AT3G09270 50.450 8.24e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01711 K00799 - gmx:548029 340.117