Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01710 ATGGCTGCAAGTCAGGAAGAGGTGAAGCTTTTGGGAATTGTGGGAAGCCCATTTGTGTGCAGGGTGGAAATTGCTCTTAAATTGAAGGGAATTGAATACAAATTTCTTGAACAACAATTGGGCACCAAGAGTGAGTTGCTCCTCAAATATAACCCAGTTCATAAGAAGGTTCCTGTGTTTGTTCACAATGAGAAGCCCATAGCAGAGTCCCTTGTGATTCTTGAGTATATCGATGAGACCTGGAAAAACAACCCCATCTTGCCTTCTGAACCTTACCAAAGAGCCATGGCTCGTTTTTGGTCCAAATTCATAGATGACAAGTGTGTGACTGCTCCATGGAAAGCTGTTTTTACTGTTGATGAGAAAGAGCGTGAGAAGAATGTTGAAGAATCATATGAGGCTCTGCAGTTTCTTGAGAATGAGCTGAAGGGAAAGTTCTTTGGTGGAGAGGAAATTAACTTTGTGGATATTGCTGCTGTGTTTATAGCATTTTGGATTCCTTTAGTTCAAGAAATAGCTGGGCTGGAGTTGTTCACAAGTGAAAAGTTTCCCAAGCTCTATGAATGGAGCCAAGAACTCATCAACCATCCAGTTGTTAAAGAATGTCTGCCTCCTAGAGACCCACTTTTTTCCTTTTTCAAAGCTCGCTATGATAGCCTTACTTCAAAGTAG 672 0.4152 MAASQEEVKLLGIVGSPFVCRVEIALKLKGIEYKFLEQQLGTKSELLLKYNPVHKKVPVFVHNEKPIAESLVILEYIDETWKNNPILPSEPYQRAMARFWSKFIDDKCVTAPWKAVFTVDEKEREKNVEESYEALQFLENELKGKFFGGEEINFVDIAAVFIAFWIPLVQEIAGLELFTSEKFPKLYEWSQELINHPVVKECLPPRDPLFSFFKARYDSLTSK. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01710 223 SUPERFAMILY GST C-terminal domain-like 79 218 IPR036282 -
Seca1g01710 223 Coils Coil 121 141 - -
Seca1g01710 223 Gene3D Glutaredoxin 1 89 - -
Seca1g01710 223 CDD GST_N_Tau 8 81 - -
Seca1g01710 223 SUPERFAMILY Thioredoxin-like 8 108 IPR036249 -
Seca1g01710 223 Pfam Glutathione S-transferase, C-terminal domain 112 197 IPR004046 -
Seca1g01710 223 FunFam Tau class glutathione S-transferase 1 89 - -
Seca1g01710 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 217 IPR010987 -
Seca1g01710 223 SFLD Main.3: Omega- and Tau-like 5 222 IPR045073 -
Seca1g01710 223 CDD GST_C_Tau 91 216 IPR045074 GO:0004364|GO:0006749
Seca1g01710 223 Pfam Glutathione S-transferase, N-terminal domain 7 79 IPR004045 -
Seca1g01710 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Seca1g01710 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 10 208 IPR045073 -
Seca1g01710 223 Gene3D - 90 223 - -
Seca1g01710 223 SFLD Glutathione Transferase (cytosolic) 5 222 IPR040079 -
Seca1g01710 223 FunFam Tau class glutathione S-transferase 87 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01710 Seca-Chr1 29504457 29506095 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01710 3 223 Glutathione S-transferase Gene Family AT2G29420 52.252 2.28e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01710 K00799 - gmx:100807613 386.726