Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01706 ATGTCACGTGCAGTTTGGTCCTTATACCTTGTCTTGTTTCTTCTCTTCATCACTACAAACTTGTTGTGGTTTCATCCCAAAAGATTTGCCTCTGCCTTGGGAAATGAGACTGATTACTTGGCATTAGTCAAATTTAAAGATTCAATATCCAAAGACCCTTTTGGAGTGTTAGCCTCTTGGAATAGTTCTAGCCACTTTTGCAACTGGCATGGAGTCACATGTAACCATCAACATCAAAGAGTTACAGAGCTGAACCTAACAAGATATCAGTTGCATGGTTTCATATCACCCCACATTGGGAATCTCTCATTTCTAAGAATTCTCCTCCTTGGGGACAATAACTTCTATGGTGAAGTGCCACAAGAACTGGGTCATTTATTTCAATTGCAGGTACTCTATTTCACTAATAACACACTAAGTGGGGAATTTCCCATTTACTTGACAAATTGCTCTGAACTAAGGAGCTTGAGTTTACATGGGAATAATTTTACTGGTCAAATACCAATGGTGATTGGTTCTCTCAAGAAGCTTCAGGTGTTACAAATTTCTAAAAACAATCTAGTTGGGCCAATTCCAACTTCCATAGGGAATCTTTCATCCCTTATTCGACTGACTATGGCTGAAAATAACTTGGAGGGAAACATACCAGAAGAAATAGGCCATTTGAAAAATTTAACATTGGTCTATTTGGGAGTCAATAAGTTTTCTGGTACACTTCCTTCTTCACTTTACAATTTGTCTTCTCTTATTGGCATCTCAGTTGCAGCCAATCAATTCCATGGTTCTCTTCCACCCAACATGTTCCTCACCTTCCCTAATCTTAGGTTGGTTGCAATGGGTGAGAATAAATTCTCAGGCCCAATACCAACTTCCTTAACAAATGCTTCTGGGATTCAAGTGTTTGACATTGTTCAAAACCAATTTACAGGACAAGTTCCAAGTTTAAGAAAGCTAAAAGATCTTTCACTTCTAAATCTAGGTTCAAATTATCTTGGTAGCAATTCATCTAATGATTTGGAGTTTTTGAAGTCTTTAGCAAACTCTAGCATGTTAGATAGATTGTATATGGACAACAATAATTTTGGAGGCCATTTTCCCAATGTTTTGGGTAATTTGTCCACCCAACTCACTCAGTTAGGATTTGGTGGCAATCAGATATCTGGAAAAATTCCTATAGAAATAGGAAATCTTGTTAACTTGATTGTTTTGGGCATGGATGATAACCTCCTAACTGAGACCATTCCAGCTACTTTTGGCAAGTTTCAGAATATGCAAGTATTAGGTTTGTCAGGAAACAGATTTTCTGGAGAGATACCATCTTTCATTGGCAATCTAACTCTGTTGTTTCAGCTGGATTTATCAAGGAACAAGTTTTTTGGAAATATTCCTTCAACTATTGGAAATTGCAGAAACTTGCAATGGCTAGACATTTCACAAAACAACCTTATTGGAGCTATACCAACAAAGGTTATTGGCCTTTCCTCTTTATCAACACTTTTGAACCTATCACATAACTCTTTAAGTGGTCCTTTTCCTGTAGAGGTGGGCATGTTACAAAATCTTAATAAGCTGGATGTGTCTGAGAATAATCTCTCTGGTGGTATTCCTACTACAATTGGACAATGCTTAAGAATGGAGTGCCTTTTTGTACAAGGAAATTCCTTCCAAGGAATCATACCATCTTCTTTGGCTTTTCTTAAAGGTCTTAGAGAGTTAGACTTGTCACAAAACAACTTGTCAGGATCAATTCCAGAAGGATTACAGAACATTTCTACTTTGGAATACTTTAATGCTTCTTTTAACATGTTAGAGGGTGAGGTACCAAAAGATGGTGTCTTCCAAAATGCAAGTTGTGTTTCACTGACTAACAATGGAAAGCTTTGTGGTGGGGTATCTGTGCTAAAGCTTCCACCTTGCCCATTAAATGCTATGAAAAAGAAAAAACAACAAAAACTTTTGTTGATAGTGGTGATAGTCTGTTCTGTTGTATTCCTTCTTCTATTGTCATGTGTTGCAGCTATCTATCAGATAAGGAAAGGAGTCAAAGGACATACAAATGTATCAATTGATTCAACAATTGACCAACTTCCTCAAGTATCATACCAGGACCTTCACCATGCAACTAATGGTTTCTCAACTAGCAAATTGATAGGTACTGGAAGTTTAGGCTTTGTGTATAAAGGATTTCTTGATTTAGAAGAAAGAGTTGTGGCAATAAAGGTTTTCAAGCTTCAAGTGAAAGGAGCTTACAAAAGTTTCATTGCTGAATGTAATGCACTCAGAAATATCAGACACAGAAATTTAGTGAAGGTTTTCACATGTTGCTCTAGTGTGGACAACAATGGAAATGAATTTAAAGCTTTAGTTTTTGAGTACATGTCAAATGGAAACTTGGAGGAATGGTTGCATCTAGAGAAAGAAAGTGCAGAGCATCCAAGAACATTGAACCTTGAGAAAAGGCTAGAAATTGTTATTGATGTTGCTTCTGCATTACATTATCTTCACTATGAATGTGAGCAAGCCATTATTCATTGTGATTTAAAGCCAAGCAATGTTCTTCTAGATGATGACATGGTAGCTCATGTGAGTGATTTTGGGTTAGCAAGACTTGTGTCAACAACTGATGGAGAAACCAATAAGCAAACTAGCACAACTGAAATAATGGGGACTATAGGTTATGCTCCTCCAGAGTATGGAATAAGTTCTCAAGTGTCAACAGAAGGTGATGTGTACAGCTTTGGGATTTTGGTTTTGGAGATGTTAACTGGGAGAAGGCCAACAGGAGAAATGTTTAGAGATGGGAACAATCTCCATAATTATGTTGAAAATGCATTTCCCAATAATATTTTGGAGATTGTTGATGCAACTCTTCTACCAGTGGTAGATGAATATCCCATCCTAAGTGTAGATGAAGAAAAGATCTTTTTGGAGACTGCAACACATTTTCATCATGATGTTGAGAAGTGTTTATTTTCATTACTTAAAATTGGACTTGCTTGTTCAGTGGAGTCACCAAGAGAAAGAATAAATATGATGGATGTCATGAGAGAGCTCAATATAATTAGCAATGATTTCATTGCCTGTTAA 3087 0.3686 MSRAVWSLYLVLFLLFITTNLLWFHPKRFASALGNETDYLALVKFKDSISKDPFGVLASWNSSSHFCNWHGVTCNHQHQRVTELNLTRYQLHGFISPHIGNLSFLRILLLGDNNFYGEVPQELGHLFQLQVLYFTNNTLSGEFPIYLTNCSELRSLSLHGNNFTGQIPMVIGSLKKLQVLQISKNNLVGPIPTSIGNLSSLIRLTMAENNLEGNIPEEIGHLKNLTLVYLGVNKFSGTLPSSLYNLSSLIGISVAANQFHGSLPPNMFLTFPNLRLVAMGENKFSGPIPTSLTNASGIQVFDIVQNQFTGQVPSLRKLKDLSLLNLGSNYLGSNSSNDLEFLKSLANSSMLDRLYMDNNNFGGHFPNVLGNLSTQLTQLGFGGNQISGKIPIEIGNLVNLIVLGMDDNLLTETIPATFGKFQNMQVLGLSGNRFSGEIPSFIGNLTLLFQLDLSRNKFFGNIPSTIGNCRNLQWLDISQNNLIGAIPTKVIGLSSLSTLLNLSHNSLSGPFPVEVGMLQNLNKLDVSENNLSGGIPTTIGQCLRMECLFVQGNSFQGIIPSSLAFLKGLRELDLSQNNLSGSIPEGLQNISTLEYFNASFNMLEGEVPKDGVFQNASCVSLTNNGKLCGGVSVLKLPPCPLNAMKKKKQQKLLLIVVIVCSVVFLLLLSCVAAIYQIRKGVKGHTNVSIDSTIDQLPQVSYQDLHHATNGFSTSKLIGTGSLGFVYKGFLDLEERVVAIKVFKLQVKGAYKSFIAECNALRNIRHRNLVKVFTCCSSVDNNGNEFKALVFEYMSNGNLEEWLHLEKESAEHPRTLNLEKRLEIVIDVASALHYLHYECEQAIIHCDLKPSNVLLDDDMVAHVSDFGLARLVSTTDGETNKQTSTTEIMGTIGYAPPEYGISSQVSTEGDVYSFGILVLEMLTGRRPTGEMFRDGNNLHNYVENAFPNNILEIVDATLLPVVDEYPILSVDEEKIFLETATHFHHDVEKCLFSLLKIGLACSVESPRERINMMDVMRELNIISNDFIAC. 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01706 1028 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Seca1g01706 1028 FunFam Piriformospora indica-insensitive protein 2 167 265 - -
Seca1g01706 1028 SUPERFAMILY L domain-like 35 331 - -
Seca1g01706 1028 PANTHER OS04G0122200 PROTEIN 220 1019 - -
Seca1g01706 1028 SMART LRR_typ_2 566 589 IPR003591 -
Seca1g01706 1028 SMART LRR_typ_2 518 542 IPR003591 -
Seca1g01706 1028 SMART LRR_typ_2 397 420 IPR003591 -
Seca1g01706 1028 SMART LRR_typ_2 102 126 IPR003591 -
Seca1g01706 1028 SMART LRR_typ_2 445 469 IPR003591 -
Seca1g01706 1028 SMART LRR_typ_2 198 222 IPR003591 -
Seca1g01706 1028 Pfam Protein kinase domain 712 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01706 1028 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 793 1028 - -
Seca1g01706 1028 Gene3D Ribonuclease Inhibitor 318 648 IPR032675 -
Seca1g01706 1028 Gene3D Transferase(Phosphotransferase) domain 1 793 1025 - -
Seca1g01706 1028 SUPERFAMILY L domain-like 374 629 - -
Seca1g01706 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Seca1g01706 1028 SUPERFAMILY Protein kinase-like (PK-like) 688 1021 IPR011009 -
Seca1g01706 1028 Gene3D Phosphorylase Kinase; domain 1 691 792 - -
Seca1g01706 1028 Gene3D Ribonuclease Inhibitor 35 317 IPR032675 -
Seca1g01706 1028 FunFam LRR receptor-like serine/threonine-protein kinase EFR 337 645 - -
Seca1g01706 1028 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 37 148 - -
Seca1g01706 1028 Pfam Leucine rich repeat 548 603 IPR001611 GO:0005515
Seca1g01706 1028 SMART serkin_6 711 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01706 1028 FunFam LRR receptor-like serine/threonine-protein kinase EFR 682 792 - -
Seca1g01706 1028 ProSiteProfiles Protein kinase domain profile. 711 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01706 Seca-Chr1 29476155 29479519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01706 35 1028 Receptor kinase-like Gene Family AT3G47570 46.660 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca1g01706 Pkinase 4.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01706 - - gmx:100782685 1180.24