Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01705 ATGGCTGTAGGTGAGGAAGAGGTGAAGCTTTTGGGAGCAAAGGGAAGTCCATTTGTTTGTAGGGTGAAGATTGCTCTTAAGTTGAAGGGAATTGAATACAAATTTCTGGAAGAAAACTTGAGCAATAAGAGTGATTTGCTCCTCAATTATAACCCAATTTATAAGAAGGTTCCTGTGTTTGTTCATAATGAGAGGCCCATATCGGAGTCCCTTGTGATTGTTGAGTACATTGATGAGACATGGAAAGGCAGGCCCATCTTGCCTTCTGAACCATACCAGAGAGCTATGGCTCATTTCTGGTCCAAGTTCATAGATGACAAGCAGTTGGTGGCTGCGTGGAAAGCTGTTTTTACCGTTGATGAGAAAGAGCGTGAGAAGAACGTTGAAGAATTATTTGTGGCTATGCAGTTTCTTGAGAATGAGCTGAAACACAAGTTCTTTGGTGGAGAGGAAATTGGCTTTGTGGATATTGCTGCTGTGTTCATAGCATTTTGGGTCCCTCTTATTCAACAAGTAGCGGGACTGCACTTGTTTTCCAGTGAAAATTTTCCAAAACTCTACAAATGGAGCCAAGAATTTATCAACCATCCACTTGTCAAAGAATGTCTGCCTCCTAGAGACCCACTTTTCGCCTTTTTCAAAGCTCGCTATGAAAGCCTTTTTGCTTCAAAATAG 675 0.4163 MAVGEEEVKLLGAKGSPFVCRVKIALKLKGIEYKFLEENLSNKSDLLLNYNPIYKKVPVFVHNERPISESLVIVEYIDETWKGRPILPSEPYQRAMAHFWSKFIDDKQLVAAWKAVFTVDEKEREKNVEELFVAMQFLENELKHKFFGGEEIGFVDIAAVFIAFWVPLIQQVAGLHLFSSENFPKLYKWSQEFINHPLVKECLPPRDPLFAFFKARYESLFASK. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01705 224 Coils Coil 121 141 - -
Seca1g01705 224 SFLD Main.3: Omega- and Tau-like 5 221 IPR045073 -
Seca1g01705 224 SUPERFAMILY Thioredoxin-like 8 107 IPR036249 -
Seca1g01705 224 CDD GST_N_Tau 8 81 - -
Seca1g01705 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 221 IPR010987 -
Seca1g01705 224 FunFam Glutathione S-transferase GSTU6 3 87 - -
Seca1g01705 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Seca1g01705 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 11 207 IPR045073 -
Seca1g01705 224 SFLD Glutathione Transferase (cytosolic) 5 221 IPR040079 -
Seca1g01705 224 Gene3D - 90 224 - -
Seca1g01705 224 FunFam Tau class glutathione S-transferase 87 223 - -
Seca1g01705 224 SUPERFAMILY GST C-terminal domain-like 79 218 IPR036282 -
Seca1g01705 224 Gene3D Glutaredoxin 1 89 - -
Seca1g01705 224 Pfam Glutathione S-transferase, C-terminal domain 107 197 IPR004046 -
Seca1g01705 224 CDD GST_C_Tau 91 216 IPR045074 GO:0004364|GO:0006749
Seca1g01705 224 Pfam Glutathione S-transferase, N-terminal domain 7 79 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01705 Seca-Chr1 29472166 29474328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01705 5 223 Glutathione S-transferase Gene Family AT3G09270 52.252 3.88e-77 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01705 K00799 - gmx:100500680 371.318