Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01700 ATGGAAAAAGGTTGTGAGGAATTGTCAAACGGTGATGTTAATAGTGGTAACAATGAAGTATGTGGTGGTGATGAGGTATGTGAAGGACCTAAAAATGTTACTGAGTTGACAGTTGATGAGATTATGTCTCTTGAATTTGATTCAGAGGAAGATGCTTTCAATTTTTATAGTAATTATGCTAAAGTAGTTGGCTTTTCTGTAAGAAAAGATGACGTCTATCGTGATGATCGGTATGTCATTGTTATGAGAAACATGGTATGTAATAGGCAAGGAGAGAGGTCTGAGAAGAACATGCAAAGGAAGGATAGGTGTCGTGAACCAAGGGCAATTACCCGCACACGTTGCCAAGCAAGGCTCCGTGTTCGTTTAGGTTACATGAGTGGAAAATGGACAGTTACTCATTTTGAACCCAACCATAATCACGAGTTGATCCCATCAACATATGTCCATTTGATTCCAGCATATAGAGGTCTTTCTGAGGGTGATAAGGCTCAAGTGAATAGTTTGCACATGTATGGTGTTCGTACTTGTCATATTTTGGGTTTCATATCAGGTCAGAAAGGGGGGTATGCTGATCTAGGCTTTTGCAAAAAGGATTTGTACAACCATATAGATAAGGACAAAAGGGCTAAAATAAAGTATGATGATGCTTTTGCTGCCTTATGTTACCTTCAGGCAAAAGCTGACAATGACCCAATGGTGTTCACAAAATTTACTATTACAGATGATGGAAATCTTAAGAATCTGTTTTGGACTGATGCAAGTAGTAGGATTGATTATCACTGTTTCGGGGATGTAGTAGCTTTTGACACAACTTACGAGAAGAATAAGTATAATAAGCCAACTTTTTCAGAAGCTATGTTTGGGAAACATCCTAAGGCAATTGTAACTAATGGTGATGGTGCAATGAGGGAAGCCATTAGGAGTGTCTTCCCAAATTCTGTTCATAGGTTGTGCTCTTGGCATCTTCATCAGAATGCATGCGAGAATGTTAAGAATCCTCAGTTTCTAGAGGAATTTAAGACATTACTTTACGTTAACATTGGACCTGATGAGTTTGAAATAAAGTGGAGCGGTTTAGTTGAAAAGTATGGTGTTTCTAATAATAGATGGGTTAAAAAAATTTATGAAATGAAGAGGTTGTGGGCTACTGCTTATATGCATGATTGTTGTTTAGGTGGTATAAAGACAACTTCTATTTGTGAAGGTATAAACTCATTTATAAAGAGATATGTGCAAAATAAGAATAGTCTTACTGAATTTTTACACAATTTTGAAAGGGCGGTTAAAGAATACAGACACAATGAGTTGATGTCTGATTTCAAGACTAAGTTTTCTTATCCTGTTCTGAGTACATCTTTGTATAAGTATGAAGTTGTTGCATCCAAAGTTTGTACAAGGAACAAGTTCTGGGATGTTAGAAAAGAGATTGAAAATGTTGCCGCTCTTAATGTCATTGATAGATCGGAAGTTGATAACAAAGTGAGGGTGAAGATAAACAAGTTTGGAAGTGCTTGTTCTGAGTATATGGTGATTTATGACAAAGATAAAGGGGTTTATGCTTGTGATTGTCATCTATTTGAGTCTTGTGGAATTTCGTGCTCTCACATCTTTTGCACAATGAAAAATGAGAGTATAGAGGTAATACCTGAATCTTTGATATGCAAGAGATGGACAAAGGCATCCAAGGATGATTTTATTTCTGAAATAAGTGTTGAAGATAATGATTCTAGTAAGTTGGATCTATTGAGGACTGGAGCTATTGCAGATGCACGTATTAGGCTCTTTAGAGCTACTTGTAAGTATCTGGGAAATTATCCTGTAAATATTGATTCAATTAACAAGTTGACTGATGGGATTGAAAAAAGAGGAAGCTCAGTTAAGAACCGCAACACGGGATCCAATGTGATTGGTGACCCTATAGTGGTTAAAACTAAAGGTGCTCCACGAAAAGGGAAAAATTGGAAGAAAAGCAAACATTGTTCGCATTGTAAGAGGACTAGTCATTATGTTTCTAAGTGTCCTGCTTTGAGAGATCGTGATGAGCTGGGAGAAATTAAAGTTGACAGCATGGCAAAAGCTACAGAATATGAAACAAATGATGATGATGTGGTTAGTGTTGTTATTTTTTAA 2133 0.3666 MEKGCEELSNGDVNSGNNEVCGGDEVCEGPKNVTELTVDEIMSLEFDSEEDAFNFYSNYAKVVGFSVRKDDVYRDDRYVIVMRNMVCNRQGERSEKNMQRKDRCREPRAITRTRCQARLRVRLGYMSGKWTVTHFEPNHNHELIPSTYVHLIPAYRGLSEGDKAQVNSLHMYGVRTCHILGFISGQKGGYADLGFCKKDLYNHIDKDKRAKIKYDDAFAALCYLQAKADNDPMVFTKFTITDDGNLKNLFWTDASSRIDYHCFGDVVAFDTTYEKNKYNKPTFSEAMFGKHPKAIVTNGDGAMREAIRSVFPNSVHRLCSWHLHQNACENVKNPQFLEEFKTLLYVNIGPDEFEIKWSGLVEKYGVSNNRWVKKIYEMKRLWATAYMHDCCLGGIKTTSICEGINSFIKRYVQNKNSLTEFLHNFERAVKEYRHNELMSDFKTKFSYPVLSTSLYKYEVVASKVCTRNKFWDVRKEIENVAALNVIDRSEVDNKVRVKINKFGSACSEYMVIYDKDKGVYACDCHLFESCGISCSHIFCTMKNESIEVIPESLICKRWTKASKDDFISEISVEDNDSSKLDLLRTGAIADARIRLFRATCKYLGNYPVNIDSINKLTDGIEKRGSSVKNRNTGSNVIGDPIVVKTKGAPRKGKNWKKSKHCSHCKRTSHYVSKCPALRDRDELGEIKVDSMAKATEYETNDDDVVSVVIF. 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01700 710 Pfam FAR1 DNA-binding domain 54 144 IPR004330 -
Seca1g01700 710 Pfam MULE transposase domain 283 326 IPR018289 -
Seca1g01700 710 ProSiteProfiles Zinc finger SWIM-type profile. 509 545 IPR007527 GO:0008270
Seca1g01700 710 PANTHER OS01G0519700 PROTEIN 40 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01700 Seca-Chr1 29301384 29303618 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g01700 FAR1 1.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01700 - - tpra:123910662 700.279