Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01686 ATGGAAGGAATGGATGTTCTTTGCAGTGACAAAACTGGAACTCTCACCCTTAATAAGCTTTCCGTGGACAAGAACTTGATTGAGGTGTTTCCTGCTGGCTTGGACAAGGATGCCATTGTCTTATATTCTGCCAGAGCTTCTAGGACTGAAAACCAAGATGCCATTGATGCATCAATTGTGGGAATGTTGGGTGACCCCAAGGAGGTATTATGA 213 0.4413 MEGMDVLCSDKTGTLTLNKLSVDKNLIEVFPAGLDKDAIVLYSARASRTENQDAIDASIVGMLGDPKEVL. 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01686 70 ProSitePatterns E1-E2 ATPases phosphorylation site. 10 16 IPR018303 -
Seca1g01686 70 SUPERFAMILY HAD-like 1 48 IPR036412 -
Seca1g01686 70 PANTHER CALCIUM-TRANSPORTING ATPASE 1 68 - -
Seca1g01686 70 FunFam Phospholipid-transporting ATPase IC 5 17 - -
Seca1g01686 70 Gene3D - 5 19 IPR023214 -
Seca1g01686 70 Gene3D - 20 68 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01686 Seca-Chr1 29083696 29084228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01686 1 68 Primary Pumps ATPases AT3G42640 83.824 8.69e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01686 K01535 - gmx:100798717 121.709