Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01683 ATGTCAACTTTGCAGATGTCCCATGTCGATTTAGAGCAAGGGAATCATCGTCGTTCGGTTGTTGGAAGTGATTTGAGTGGTGAGGGGAGCCTGTGTTTCTCTGATGCTGATGATGGTTCCAGCTATTCTCGTTTCTATTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGTTGGGGGTGTTCCTGATTCTGGGAGAGCTTCTTCTGCTACTGATTGCTCTGTGGAGGTGGAAACTAGAACTGGGGTTCCAGAGATTAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGAAAGTCATGAGTCTGGTGCTCCCATCGAATTGGGTTGTTCTTGTAAGGATGATTTAGCTGCTGCTCACAAGCACTGTGCTGAGACCTGGTTCAAGATTAAGGGAAATAGGGACCTGTGA 462 0.4567 MSTLQMSHVDLEQGNHRRSVVGSDLSGEGSLCFSDADDGSSYSRFYSTNGGSYDDYSFACVSDPEVGGVPDSGRASSATDCSVEVETRTGVPEIKVHLAKVEKDCRICHMGLESESHESGAPIELGCSCKDDLAAAHKHCAETWFKIKGNRDL. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01683 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 152 IPR013083 -
Seca1g01683 153 PANTHER ZINC FINGER, RING-CH-TYPE 16 151 - -
Seca1g01683 153 SUPERFAMILY RING/U-box 102 150 - -
Seca1g01683 153 ProSiteProfiles Zinc finger RING-CH-type profile. 97 153 IPR011016 GO:0008270
Seca1g01683 153 SMART ringv_2 104 151 IPR011016 GO:0008270
Seca1g01683 153 Pfam RING-variant domain 105 149 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01683 Seca-Chr1 29008823 29012082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01683 69 151 C3H Transcription Factor Family AT5G05830 66.265 1.72e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01683 - - gmx:100808666 284.648