Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01676 ATGGCTTTCACATTTCAGATGCTTCAATCCATCAAACTGATACCTTTTTGGCTTCTACTTGTAATGTGTTTTTGTGCATTCACAGTGGCATCTTCTCAACATGTTACTAGTTCTTCCAAAAGTGTTTCATCTACTTTTGCCACATTTCAAATTAGAGAAGCAAGTGTTCTGTTAAAGTGGAAAGCCACCTTTGACAAGCAAAGCCAGGCTTTGCTATCTTCATGGAGTGGTAATAGTTCATGCAATTGGCTGGGAATTATGTGTGATAGGTCCAGATCCGTTTCCAACATAAACCTTACATCTATTGGACTAAGAGGTACGCTTGAAAGTCTCAACTTCTCATCACTTCCAAACATTCTCACTCTAAATATAAGTCACAACTCCTTGAATGGAAGTATTCCTCCCCACATTCGGGTGTTGTCTAAACTCTCCCATCTTGATCTTAGTCACAATAATCTCTCTGGAACAATTCCATATGAGATAACACAATTAGCCAACCTTCAAATTTTACATTTGGCTAATAATGTTCTCTCTGGTTCCATTCCTAGAGAAATAGGTGCATTAAGGAATTTGAGAGAGTTTAGTATTGATTTTGCCAATCTCACAGGAACAACTATCCCAATTTCTATATGGAAACTAGCCTCTTTGTCATACCTTTCTTTTTGGAAGTGCAATCTGACAGGGTCTATCCCAATTTCTATAGGAAATTTGGCCAACTTGTCATATCTAGATTTAACAGAGAACAACCTTTCTGGCTACATTCCTAAAGAAATTGGAAAATTGTCTAACCTAAAGTATTTATGGCTTGGACATAATAACTTCAATGGTTCTCTTCCTCAAGAAATTGGGAAGTTACAGAGCCTATTGGTTATACATCTTCAGGGAAATAAATTATCTGGCCATATTCCTGCTGGAACTTGGGAGTTGGTCAATGTGAAAGAATTCTGGCTTCAAGACAATAATCTTTCTGGTTTCATTCCTAAAGAGATTGGGAAGTTGGTCAATGTGGAAGAATTGATGCTTACAGGAAATAATCTTTCTGGTTCAATTCCTAAAGAAATTGGGGAGTTGGTCAATGTGAAACAATTGTCACTTCAAGACAATATTCTCTCTGGTTTCATTCCTAAAGAAATTGGAATGTTGACAACTATGTATATGCTTGATTTGTCCAATAATTCTCTCTCTGGTAAAATTCCCCCTTCAATTGGAAACTTGAGCAATTTAGTATATCTTTACCTTTATGGCAACCATCTCACTGGTCCCATTCCCAAAGAAGTTGGAAAACTCTTTCTTCTTTCAACAATCCAATTTAATTATAACAACCTTTCTGGACCAATTCCTTCTACAATTGGAAATTTGACAAAAATCAATTCAATTTTTTTATCATCAAATGGACTCAGTGGCATCATTCCTGATGAAATGAAATGGTTAACCAATTTGGATAATTTGCAGCTATCTCATAATAATTTCATAGGTCAATTGCCTCACAACATTTGCACTGGTGGAAAGTTGACCAAGTTTGCTGCTATGAATAACCACTTAACAGGTGTGGTTCCAAAGAGTTTGAAGAACTGCTCTAGTCTTGTAAGAGTCAGGCTTGAACAAAATCAGCTGTCTGGAAATATAACAGATGATTTTGGTGTATATCCAAATTTGGATTACATGGGATTGAGTGAAAACAAATTTTATGGCCACCTTTCACCAAATTGGGGAAAGTGCTACAACTTGACAAGCCTCAATATCTCTAACAATAATTTATCAGGTGGTATACCACCAGAGCTAGGCAAGGCAACCAACTTACATGTACTTGACTTGTCTTCAAACCATCTTACAGGGAAAATTCCAAATGAACTTGGCAACTTGACTAAGTTGAACAAACTCATGTTAAGCAGCAATCATCTTTCAGGAAATGTTCCTGTACAAATAGCATCATTACATGATCTGGAAACCTTAGAGCTTGCAGCAAATAATTTAAGTGGTTTCATCACAACACAACTTGCAGGGTTGCCTAAGTTGTGGAACTTGAATTTGAGCCAAAATAAATTCAAGGGGAAAATACCTATTGAGTTTGGCCAATTCAAAGCTCTTCAAATTCTTGACCTCAGTGGGAATCTTTTGGGTGGAACAATACCATCTATGTTCGCACAGTTGAAATACTTAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTGTCATTCCCTCTAGCTTTAAACAAATGTTAAGCTTGTCTTATGTTGATATATCATACAACCAATTAGAGGGTCCACTTCCAGACATCCCAGCCTTCCATAATGCTAAAATTGAAGCATTGAGAAACAACAAAGGCTTGTGTGGTAATGTCTCTGGCTTTGAGCCTTGCCCAAGATCAAGTGGTGAAAGTCAAAATCATAAGAATAACAAAGTCTTATTGATAGTTTTACCCATTACAGTGGGCGCTCTAATACTTGCATTAGTTTCTTTTGGAGTGTCAAAACATCTCTCCCAAACTTCAGCCAATGAAGAATGCCAGGCTGCAGAATCAAAAGCTGAAAATCTATTTGCTATATGGAGTTTTGATGGCAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAATATCTCATTGGGGTTGGAGGGCAGGGAAGTGTTTACAGAGCAAAGTTGCATACAGGACAAGTTGTTGCTGTGAAGAAACTTCATTCAACACCAAATGGATTAGAAAGGTCCAATCTAAAAGCTTTCACAAGAGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTGAAGTTATATGGATTTTGTTTGCATTCACAATACTCATTTTTGGTTTGTGATTTATTGGAGAGAGGTAGTGTGGAGGAGATTTTGAAAGATGATCAACAAGCAATTGCATTTGATTGGAATAGGAGGCTGAATGTCATTAAAGATGTGGCTAATGCTTTATGCTATATGCACCATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTGTTGAATCTGGAATATGTAGCTCATGTCTCAGACTTTGGAACAGCCAAGCTTCTGAATCCAAATTCAGCCAACTGGACCTCATTTGCAGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTAGTAGCATTGGAAATACTTTTTGGGAAGCACCCTGGAGATGTTATATCTTCCTTGCTATCATCTTCATGGACTGTAGTGGATGATATTATGCCATTGATGGATAAGTACTTGGACCAACGTCTCCCTCATCCCACAAATCCTATTGTTAAGGAGTTGGTATCAATTGTAAGGATGACAATTGCTTGCTTGACTGAAAGCCCACGTTCTCGCCCTACCATGGAGCAGGTTGCCAAGGAGTTTGTGATCTCAAAGCAATCTTCAATGGATTAG 3453 0.375 MAFTFQMLQSIKLIPFWLLLVMCFCAFTVASSQHVTSSSKSVSSTFATFQIREASVLLKWKATFDKQSQALLSSWSGNSSCNWLGIMCDRSRSVSNINLTSIGLRGTLESLNFSSLPNILTLNISHNSLNGSIPPHIRVLSKLSHLDLSHNNLSGTIPYEITQLANLQILHLANNVLSGSIPREIGALRNLREFSIDFANLTGTTIPISIWKLASLSYLSFWKCNLTGSIPISIGNLANLSYLDLTENNLSGYIPKEIGKLSNLKYLWLGHNNFNGSLPQEIGKLQSLLVIHLQGNKLSGHIPAGTWELVNVKEFWLQDNNLSGFIPKEIGKLVNVEELMLTGNNLSGSIPKEIGELVNVKQLSLQDNILSGFIPKEIGMLTTMYMLDLSNNSLSGKIPPSIGNLSNLVYLYLYGNHLTGPIPKEVGKLFLLSTIQFNYNNLSGPIPSTIGNLTKINSIFLSSNGLSGIIPDEMKWLTNLDNLQLSHNNFIGQLPHNICTGGKLTKFAAMNNHLTGVVPKSLKNCSSLVRVRLEQNQLSGNITDDFGVYPNLDYMGLSENKFYGHLSPNWGKCYNLTSLNISNNNLSGGIPPELGKATNLHVLDLSSNHLTGKIPNELGNLTKLNKLMLSSNHLSGNVPVQIASLHDLETLELAANNLSGFITTQLAGLPKLWNLNLSQNKFKGKIPIEFGQFKALQILDLSGNLLGGTIPSMFAQLKYLETLNLSHNNLSGVIPSSFKQMLSLSYVDISYNQLEGPLPDIPAFHNAKIEALRNNKGLCGNVSGFEPCPRSSGESQNHKNNKVLLIVLPITVGALILALVSFGVSKHLSQTSANEECQAAESKAENLFAIWSFDGKMVYENIIEATEEFDNKYLIGVGGQGSVYRAKLHTGQVVAVKKLHSTPNGLERSNLKAFTREIQALTEIRHRNIVKLYGFCLHSQYSFLVCDLLERGSVEEILKDDQQAIAFDWNRRLNVIKDVANALCYMHHDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNPNSANWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVVALEILFGKHPGDVISSLLSSSWTVVDDIMPLMDKYLDQRLPHPTNPIVKELVSIVRMTIACLTESPRSRPTMEQVAKEFVISKQSSMD. 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01676 1150 ProSitePatterns Tyrosine protein kinases specific active-site signature. 994 1006 IPR008266 GO:0004672|GO:0006468
Seca1g01676 1150 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 305 399 - -
Seca1g01676 1150 Gene3D Ribonuclease Inhibitor 382 498 IPR032675 -
Seca1g01676 1150 FunFam Uncharacterized protein 499 797 - -
Seca1g01676 1150 ProSiteProfiles Leucine-rich repeat profile. 719 740 IPR001611 GO:0005515
Seca1g01676 1150 Gene3D Ribonuclease Inhibitor 307 381 IPR032675 -
Seca1g01676 1150 PRINTS Leucine-rich repeat signature 717 730 - -
Seca1g01676 1150 PRINTS Leucine-rich repeat signature 143 156 - -
Seca1g01676 1150 SUPERFAMILY L domain-like 397 495 - -
Seca1g01676 1150 SUPERFAMILY Protein kinase-like (PK-like) 854 1140 IPR011009 -
Seca1g01676 1150 SUPERFAMILY L domain-like 78 255 - -
Seca1g01676 1150 FunFam Nuclear pore complex protein NUP107 50 207 - -
Seca1g01676 1150 SMART LRR_typ_2 285 309 IPR003591 -
Seca1g01676 1150 SMART LRR_typ_2 333 357 IPR003591 -
Seca1g01676 1150 SMART LRR_typ_2 477 501 IPR003591 -
Seca1g01676 1150 SMART LRR_typ_2 717 740 IPR003591 -
Seca1g01676 1150 SMART LRR_typ_2 140 163 IPR003591 -
Seca1g01676 1150 SMART LRR_typ_2 405 429 IPR003591 -
Seca1g01676 1150 SMART LRR_typ_2 573 597 IPR003591 -
Seca1g01676 1150 SMART LRR_typ_2 164 188 IPR003591 -
Seca1g01676 1150 SMART LRR_typ_2 693 716 IPR003591 -
Seca1g01676 1150 SMART LRR_typ_2 621 645 IPR003591 -
Seca1g01676 1150 SMART LRR_typ_2 237 261 IPR003591 -
Seca1g01676 1150 SUPERFAMILY L domain-like 201 424 - -
Seca1g01676 1150 FunFam MDIS1-interacting receptor like kinase 2 949 1147 - -
Seca1g01676 1150 Gene3D Ribonuclease Inhibitor 499 790 IPR032675 -
Seca1g01676 1150 Pfam Leucine Rich Repeat 387 405 IPR001611 GO:0005515
Seca1g01676 1150 ProSiteProfiles Protein kinase domain profile. 869 1142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01676 1150 Pfam Leucine rich repeat N-terminal domain 53 89 IPR013210 -
Seca1g01676 1150 ProSiteProfiles Leucine-rich repeat profile. 599 622 IPR001611 GO:0005515
Seca1g01676 1150 Pfam Leucine rich repeat 695 754 IPR001611 GO:0005515
Seca1g01676 1150 Pfam Leucine rich repeat 215 274 IPR001611 GO:0005515
Seca1g01676 1150 Pfam Leucine rich repeat 575 634 IPR001611 GO:0005515
Seca1g01676 1150 SMART LRR_sd22_2 357 378 - -
Seca1g01676 1150 SMART LRR_sd22_2 140 169 - -
Seca1g01676 1150 SMART LRR_sd22_2 261 276 - -
Seca1g01676 1150 SMART LRR_sd22_2 645 671 - -
Seca1g01676 1150 SMART LRR_sd22_2 693 722 - -
Seca1g01676 1150 SMART LRR_sd22_2 381 407 - -
Seca1g01676 1150 SMART LRR_sd22_2 309 338 - -
Seca1g01676 1150 SMART LRR_sd22_2 453 482 - -
Seca1g01676 1150 PANTHER LEUCINE RICH REPEAT KINASE 2 427 1146 - -
Seca1g01676 1150 FunFam MDIS1-interacting receptor like kinase 2 isoform A 400 498 - -
Seca1g01676 1150 Pfam Protein kinase domain 871 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01676 1150 FunFam Leucine-rich receptor-like protein kinase family protein 208 304 - -
Seca1g01676 1150 FunFam Leucine-rich repeat receptor protein kinase MSP1 832 948 - -
Seca1g01676 1150 Gene3D Phosphorylase Kinase; domain 1 828 947 - -
Seca1g01676 1150 Gene3D Transferase(Phosphotransferase) domain 1 949 1149 - -
Seca1g01676 1150 Gene3D Ribonuclease Inhibitor 204 306 IPR032675 -
Seca1g01676 1150 Gene3D Ribonuclease Inhibitor 52 203 IPR032675 -
Seca1g01676 1150 SUPERFAMILY L domain-like 511 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01676 Seca-Chr1 28641745 28645349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01676 35 687 Receptor kinase-like Gene Family AT4G08850 36.322 4.44e-106 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g01676 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01676 - - gmx:100811066 1357.43