Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01647 ATGGTCTTGCAGAGCCCTTGTGAGCATGCTTTCTGTCTCGATTGTGCTAGAAGTGATTCCTTGTGCTACCTGTGTGACGAACGAATCCAGAAAATTCAGACAATAAAAATGATGGAAGGAATCCTCATATGTGCAGCTCCTCATTGTCTCAAGTCTTTCTTGAAGAAGGCTGAATTTGAATCGCATATCCAAGACAGCCATGCTAACCTGCTTCGTCCCAATGCAGATAAAGAAGATGGAAATGAGTCAGAGGCACAGAGTGTTAGACAATCTACAGCTTCAGATTCCACTGCTCGAGGTCCCCAAAGGCCAGTTTTTTCTCCTGGTTCAAATTCCCAGCAACATGATCTGGAAGACAAAACTCGTCGACAGCCACCAAGAGAGCAAGCTCCTTCACGGTCAACTCTGCAGCCAAAGCCACCATTTTTTGGTCAACAACATCACCCTTCAGATACCTTGTCTGGCTCTGTTGGAGGTATGCAACAAGGCTTTCATCAACAAAGCTTTGACATGCAGCATCCCCCACAAGAACCTTCCCAGTTTGCTGACAGGCAGCAAGCAGTTGGTCCAGAGACCCCATTTTCTGAGTATCCAACAATGCACTCTGCACAACCTTCAAATATCCCCTCATTGGTTACTTCAAACCCAAACATGAACCCGCCCATGCCATTTGGTTATCCCCCTTACCCGCATGAACGAGCTCAATCATTTTATGCTGCTCCCTATGACATGCCCAGGCAGGACTCAGGATCTGATGTAGGTGGGGACCAGAGTTCATTACTGGGTTTCCCACAAGGTGTCCCAAGTGGCCCAAATTTTCCAGGAAATTATCCCCAGCCCTGGCATGCAGGAATAGCTGGTGTGCCTTTTGAACAAGCACAGGGTGGTATGGATCCAAGGGATACCAAAGGTATATTGGCACCACCCATGCCCCTCCCACCACCACCTCCGCCTCCACCCCACATGTCACATATGAAGCAGAACTACTATTCTGGTGAGCATGGACATGATGGTCAAGGTTGTGGGTGGCAGCACGATAACCGTGATAGCTTTGGTAGCCAAGGCTAG 1068 0.485 MVLQSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKAEFESHIQDSHANLLRPNADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKTRRQPPREQAPSRSTLQPKPPFFGQQHHPSDTLSGSVGGMQQGFHQQSFDMQHPPQEPSQFADRQQAVGPETPFSEYPTMHSAQPSNIPSLVTSNPNMNPPMPFGYPPYPHERAQSFYAAPYDMPRQDSGSDVGGDQSSLLGFPQGVPSGPNFPGNYPQPWHAGIAGVPFEQAQGGMDPRDTKGILAPPMPLPPPPPPPPHMSHMKQNYYSGEHGHDGQGCGWQHDNRDSFGSQG. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01647 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 5 345 IPR040383 GO:0016567|GO:0061630
Seca1g01647 355 MobiDBLite consensus disorder prediction 306 323 - -
Seca1g01647 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 39 IPR013083 -
Seca1g01647 355 MobiDBLite consensus disorder prediction 128 186 - -
Seca1g01647 355 ProSitePatterns Zinc finger C2H2 type domain signature. 44 67 IPR013087 -
Seca1g01647 355 MobiDBLite consensus disorder prediction 85 114 - -
Seca1g01647 355 MobiDBLite consensus disorder prediction 72 216 - -
Seca1g01647 355 MobiDBLite consensus disorder prediction 298 355 - -
Seca1g01647 355 MobiDBLite consensus disorder prediction 197 216 - -
Seca1g01647 355 ProSitePatterns Zinc finger RING-type signature. 7 16 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01647 Seca-Chr1 27829832 27834604 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01647 6 354 C2H2 Transcription Factor Family AT5G01160 38.936 1.05e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01647 K15685 - gmx:100817582 620.157