Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01642 ATGATAGTTGCTATGGACTTGAATGCCTCGCCGGTGCCGGAGGAAGATGAAGATGCTTTTGAGGGCCCGGTGGAAGAGTATAATACACCAGAAGAACGCAAAGAAACTGCAATTGATATAGCACGCCGGGAACGGGAAGAAAGAAAGAACCGGTTGAAGAGAGAACGTTCAGATGACAGACCTGTGCAAGTATCACAGTTGCCTGGACATGATCAGCAACTCCATACTAAGCGACTTAAATCATATGATATAAGTAAGCTTCCTCCGGGTTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTTTTGCATGATACCTTCTAAGGTTCCACTTGGTGAATCATTCAATGAATATATTGTTCCTGGAAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTGATTGATTTGACAAATACTTCTCGATACTATCCAGTATCAGATCTAAAGAAAGAGGGTATCAAGCATGTAAAGATTCAGTGCAAGGGCCGCGGTTCTGTACCTGGCAATTTATCTGTCAATCAATTTGTCTATGAGGTTACACAATTTCTATCACGTCAAAAACACTCAAAGAAGTATATGCTTGTTCATTGTACACATGGTCATAATCGTACAGGATACATGATCATCCACTATCTAATGCGCACAATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGATGCACGCCCTCCTGGAATCTATAAGCCGGAGTATATTAATTCATTATACACATTTTATCATGAAAAAAAGCCTGAAATGGTAGTTTGTCCTCCTACTCCTGAGTGGAAGAGGACTCCTCCTGAACTTGTTGATCTCAATGGTGATGCAGTTCCAAATGATGATGATGATGATGACGATGATGGAGTTCCAGGTTCTCCTTTGCATGACAACCATGAGACTGACACAATGACAAATGATGATGTTTTGGGTGATGAGATACCTAATGATCAGCAAGATTTATTTCGACAGTTCTGCTTTCAAACACTCAAACTGGGTGTTGGGGCCAGAGGACACATGCAATTTCCAGGATCACACCCTGTTTCTTTAAGCAGGGATAATTTACAGCTGTTACGACAACGTTATTATTATGCAACGTGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGATGGATGTTACTTGATTGATAGATGCTTTAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGGTTACAACATCCAAGGGGTTGATGGAAAAGACTCACCACTTTACATTACTTGATGGGGAGATGATTATTGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTCATATATGATATGATGGCAGTCAATCATGTATCAGTAATAGAGCGACCTTTCTATGAACGGTGGAGGATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGATTCCAGAGCAAAAATCTTTACTATAGATATGACATGGAGCCATTCAGGGTGAGGAGGAAAGCTTTTTGGTTGCTCTCTACTGTCACAAAACTCTTAAACGAATTCATTCCAAAACTCTCACATGATGCAGATGGCCTCATATTTCAGGGTTGGGACGATCCTTATATACCACGCACTCATGAAGGCCTCTTAAAATGGAAATATGCTGATCTGAACTCAGTTGATTTTCTCTTTGAGATTGAAGATGATCGTCAGCTACTTTTTCTCTATGAGCGAGGAAAAAAGAAACTCATGGAAGGGTATAGGGTTGCGTTTGAAGAAGGTTCAGACCCCTTGCTTTATTCTGGAAAGATCATTGAGTGTGCTTGGGATTCTGATAAACAAGAATGGATATTCAAGCGAATCAGAACAGATAAGTCAACTCCAAATGACTTTAATACTTATAAGAAGGTGATGAAAAGTATAAGAGACAATATCACTGAGGATATCCTGTTGGATGAAATAAATGAGATAATCCGCCTTCCCATGTATGCCGACAGGATAAGAATCGATAGCAAAGCCCATCATCACACTAACATGGCTAGGCGAAGGTGA 2055 0.4005 MIVAMDLNASPVPEEDEDAFEGPVEEYNTPEERKETAIDIARREREERKNRLKRERSDDRPVQVSQLPGHDQQLHTKRLKSYDISKLPPGWLDCPSFGQEIFCMIPSKVPLGESFNEYIVPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRGSVPGNLSVNQFVYEVTQFLSRQKHSKKYMLVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDARPPGIYKPEYINSLYTFYHEKKPEMVVCPPTPEWKRTPPELVDLNGDAVPNDDDDDDDDGVPGSPLHDNHETDTMTNDDVLGDEIPNDQQDLFRQFCFQTLKLGVGARGHMQFPGSHPVSLSRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRCFNFRRVQMRFPCRVTTSKGLMEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDMMAVNHVSVIERPFYERWRMLEKEVIEPRNQERFQSKNLYYRYDMEPFRVRRKAFWLLSTVTKLLNEFIPKLSHDADGLIFQGWDDPYIPRTHEGLLKWKYADLNSVDFLFEIEDDRQLLFLYERGKKKLMEGYRVAFEEGSDPLLYSGKIIECAWDSDKQEWIFKRIRTDKSTPNDFNTYKKVMKSIRDNITEDILLDEINEIIRLPMYADRIRIDSKAHHHTNMARRR. 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01642 684 CDD Adenylation_mRNA_capping 346 555 IPR001339 GO:0004484|GO:0005524|GO:0006370
Seca1g01642 684 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 265 IPR020422 GO:0006470|GO:0008138
Seca1g01642 684 Gene3D - 592 661 IPR012340 -
Seca1g01642 684 Gene3D DNA ligase/mRNA capping enzyme 310 554 - -
Seca1g01642 684 FunFam mRNA capping enzyme, putative 317 552 - -
Seca1g01642 684 Pfam Dual specificity phosphatase, catalytic domain 139 259 IPR000340 GO:0008138|GO:0016311
Seca1g01642 684 SUPERFAMILY Nucleic acid-binding proteins 557 668 IPR012340 -
Seca1g01642 684 PANTHER MRNA-CAPPING ENZYME 82 666 - -
Seca1g01642 684 MobiDBLite consensus disorder prediction 11 25 - -
Seca1g01642 684 MobiDBLite consensus disorder prediction 278 325 - -
Seca1g01642 684 Pfam mRNA capping enzyme, C-terminal domain 559 651 IPR013846 -
Seca1g01642 684 MobiDBLite consensus disorder prediction 288 302 - -
Seca1g01642 684 MobiDBLite consensus disorder prediction 26 61 - -
Seca1g01642 684 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Seca1g01642 684 SMART dsp_5 146 261 IPR020422 GO:0006470|GO:0008138
Seca1g01642 684 ProSiteProfiles ATP-dependent DNA ligase family profile. 441 582 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca1g01642 684 Pfam mRNA capping enzyme, catalytic domain 358 554 IPR001339 GO:0004484|GO:0005524|GO:0006370
Seca1g01642 684 FunFam mRNA capping enzyme family protein 83 300 - -
Seca1g01642 684 PIRSF mRNA_capping_HCE 73 684 IPR017074 GO:0004484|GO:0006370|GO:0140818
Seca1g01642 684 MobiDBLite consensus disorder prediction 1 71 - -
Seca1g01642 684 MobiDBLite consensus disorder prediction 303 318 - -
Seca1g01642 684 FunFam mRNA-capping enzyme 576 669 - -
Seca1g01642 684 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 276 IPR029021 -
Seca1g01642 684 Gene3D Protein tyrosine phosphatase superfamily 64 280 IPR029021 -
Seca1g01642 684 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Seca1g01642 684 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 319 555 - -
Seca1g01642 684 Coils Coil 38 58 - -
Seca1g01642 684 CDD RNA_5'-triphosphatase 90 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01642 Seca-Chr1 27716571 27731663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01642 1 684 Protein tyrosine phosphatase (PTP) family AT3G09100 65.797 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01642 K13917 - gmx:100803597 1236.48