Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01633 GTGGTCGCGCGAAACAGAGGTCGACCACCGTGTGCATTGTTGCAAAATAGAAGACGCCACCGTTGCTCTCCGCCGTGCTCCTTCATTCCCATTGTTCATGCACGAGAAGACGTCGCAATCGTGCCTAAACTACAGAAATGTCCACTGCGAGTTTCCTTCTCCGCTGTGACATCCTTCACACCATTCGCTTTCCCTTCCTTCGCAAGATGGTCCTCTGAAGCTCATGCTTTAAACACAGATTCCCCTTCTCCTCTTACTCCTGCTGGCACCTGTCGTAATGATAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTTAAGCATGCAGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACCCTGGAGGTCCAAAAGAGGAGGATATATGACATAACTAATGTCTTGGAAGGCTTTGATCTCATCGAAAAGAAGCTTAAGAACATAATACATTGGAAGGGAATTAAATCTTCTACTTCTGGTGAGGTGGATGGTGATATCTCTATGCTCAAGGCAGAAGTTGAACAACTTTCTTTGGAAGAGCACAAATTAGCTTTGTTTTTGGCTTTTTGCTATTTCTAA 591 0.4399 VVARNRGRPPCALLQNRRRHRCSPPCSFIPIVHAREDVAIVPKLQKCPLRVSFSAVTSFTPFAFPSFARWSSEAHALNTDSPSPLTPAGTCRNDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGFDLIEKKLKNIIHWKGIKSSTSGEVDGDISMLKAEVEQLSLEEHKLALFLAFCYF. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01633 196 PANTHER TRANSCRIPTION FACTOR E2F 77 187 IPR015633 GO:0000978|GO:0006357
Seca1g01633 196 SUPERFAMILY "Winged helix" DNA-binding domain 92 155 IPR036390 -
Seca1g01633 196 Gene3D - 86 159 IPR036388 -
Seca1g01633 196 Pfam E2F/DP family winged-helix DNA-binding domain 94 157 IPR003316 GO:0005667|GO:0006355
Seca1g01633 196 SMART E2F_TDP_2 92 157 IPR003316 GO:0005667|GO:0006355
Seca1g01633 196 FunFam E2F transcription factor 1 86 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01633 Seca-Chr1 27422801 27424787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01633 76 187 E2F-DP Transcription Factor Family AT2G36010 66.667 1.81e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca1g01633 E2F_TDP 2.5e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01633 K06620 - gmx:100811762 190.66