Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01631 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAAAGGGCCATGGAGTCCAGAAGAAGATCAAATCCTCATCAATTACATCAACACCTATGGCCATGCCAATTGGCGTGCTCTGCCCAAACATGCTGGGCTGCTAAGATGTGGAAAGAGTTGCAGACTACGGTGGACAAATTATCTGAGACCGGACATCAAACGGGGCAACATTACCAGAGAAGAAGAGGACCAAATAATCAAGTTGCATGAAATGTTGGGAAATAGGTGA 267 0.4682 MGRAPCCEKMGLKKGPWSPEEDQILINYINTYGHANWRALPKHAGLLRCGKSCRLRWTNYLRPDIKRGNITREEEDQIIKLHEMLGNR. 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01631 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 88 - -
Seca1g01631 88 SMART sant 13 63 IPR001005 -
Seca1g01631 88 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Seca1g01631 88 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca1g01631 88 CDD SANT 16 61 IPR001005 -
Seca1g01631 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca1g01631 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 88 IPR017930 -
Seca1g01631 88 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca1g01631 88 Gene3D - 11 67 - -
Seca1g01631 88 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01631 Seca-Chr1 27348624 27349604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01631 1 88 MYB Transcription Factor Family AT2G31180 84.091 6.48e-54 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca1g01631 Myb_DNA-binding 9.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01631 K09422 - gmx:100802214 180.259