Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01610 ATGCTTTTGTTCATTCCTAATGGCCTCTTCTCCTCTTCATGCTGTTGGTTCTTCTTCCGTCACTGCCACTTCCCAAAGCAGAGAAGCAAGTGCTTTGTTGAAGTGGAAAGCCAGCCTTTGCTATCTTCATGGACTGGCAACAATTCATGCAATTGGCTGGGAATTACGTGTGAGGAGTCTGAATCTGTCTCCAAGGTAAATCTTATCAATTTGGGATTAAGAGGTACGCTTCAAAGTCTCAACTTCTCATTACTTCCAAACATCCTCACTTTAGATATAAGTCATAACTCCTTCAATGGAAGTATTCCAAATTCTATTGGGAAGTTGGTCTTCCTATCACATTTGGATGTTGGAAACAACAAACTCTCCAGGGACATTCCAAATGAAATTTGGAATTTGCGCAACTTAAAGTATTTAGCACTTGATTTAAATAACTTCAATGGTTCAATAATTGCCCAAGAAATTGTGAAGTTGTATAAGATAGAGACTCTAGATCTTGGTGATAGTGGTCTTTCCGCAACTAGTCCCATCCTTGAAGAACTATCCAAGTTGGGAAATTTAACATATCTTTCCCTTACGACGTGCAATCTCACAGAGCCTATCCCAAGTTCTATCGGAAAGTTAGTCAACTTGTCATATCTAAATATAGTGAAGAACCACATTTTTGGTAATATTCCTCAGGAAATTGGGAAGTTGCGGAACTTAGAGTATATACTTCTTTTTGCCAACGAAATCTCGGGCCACATTCCGAAGGAAATTGGAGAGTTGGTCAACCTGATGGAATTATACCTTTATGAAAATAATCTCTCTGGTTCCATTCCTAGGGAAGTTGGGAAGTTAGTCAACATGGAGTTTTTAACTCTTAAAGCGAATGGTTTTTCTGGTTCCATTCCTCAAGAAATTGGAATGATGACAAAAATGACTGTTCATGATTTATCCATTAACTCTCTCTCTGGTAAAATTCCCCTTTCAATTGGAAACTTAAGCAATTTGAGTTTTCTTTACCTTAATTATGGGAATCATCTCACCGGTCCCATTCCCAAAGAAGTCAATTGCCTCACAACATTTGCACTGGTGGAAACTGGAAAGTTGACCAAGTTTGCTGCTATGAATAACCACTTAACAGATGATTTTGGTGTATATCCAAATTTGGATTACATGGGATTGAGTGGAAACAAATTTTATGGCCATCTTTCACCAAATTGGGGAAAGTGCTACAACTTGACAAGCCTCATTATCTCTAACAATAATTTATCAGGTGGTATACCACCAGAGCTAGGCAAGGCAACCAACTTACATGTACTTGACTTGTCTTCAAACCATCTTACAGGGAAAATTCCAAATGAACTTGGCAGCTTGACTAAGTTGAACAAACTCATGTTAAGCAGCAATCATCTTTCAGGAAATGTTCCTGTACAAATAGCATCATTACATGATATGGAAACCTTGGAACTTGCAGAAAATAATTTAAGTGGTTTCATCACAACACAACTTGCAGGGTTGTCTAAGTTGTGGAACTTGAATTTGAGCCAAAATAAATTCAAGGGGAAAATACCTATTGAGTTTGGCCAATTCAAAGCTCTTCAAATTCTTGATCTCAGTGGGAATCTTTTGGGTGGAACAATACCATCTATGTTCTCACAGTTGAAATACTTAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTGTCATTCCCTCTGACTTTAGACAAATGTTAAGCTTGTCTTATGTTGATATATCATACAACCAATTAGAGGGTCCACTTCCAGACATCCCAGCCTTCCATAATACTAAAATTGAAGCATTGAGAAACAACAAAGGCTTGTGTGGTAATGTCTCTGGCTTAGAGCCTTGCCCAAGATCAAGTGGGGAAACTCAAAATCATAAGAATAACGAAGTCTTATTGATAGTTTTACCCCTTACAGTGGGCGCTCTAATACTTGCATTAGTTTCTTTTGGAGTGTCAAAACATCTCTCCCAAACTTCAGCCAATGAAGAATGCCAGGTTGCAGAATCTCAAGCTCAAAATATATTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATAATTGAAGCCACAGAAGAGTTAGATAATAAACATCTCATTGGGGTTGGAGGGCAGGGAAGTGTTTACAAGGCAGAGTTGCACACTGGTCAAGTTGTTGCTGTGAAGAAACTCCAATCAGTACCAAATGAAGAAATTTCCAATCTAAAAGCTTTCAGAAGTGAGATCCAAGCTTTGACAGAAATTCGACACCACTTTGGAACTGCCAAGCTTCTTAATCCTAATTCAACCAACTGGACCTCATTTGTTGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTAGTAGCATTGGAAATACTTTTTGGGAAGCACCCTGGAGATGTTATATCTTCTTCCTTGCTATCATCTTCATGGACTGCAGTGGGTGATATTATGCCATTGATGGATAAGTACTTGGACCAACGTCTCCCTCATCCCACAAATCCTATTGTTAAGGAGTTGGTATCAATTGTAAGGATAGCAATTGCTTGCTTGATTGAAAGCCCACGTTCTCGCCCTACCATGGAGCAAGTTGCCAAGGAGCTCTTGATCTCAAAGTAA 2667 0.3866 MLLFIPNGLFSSSCCWFFFRHCHFPKQRSKCFVEVESQPLLSSWTGNNSCNWLGITCEESESVSKVNLINLGLRGTLQSLNFSLLPNILTLDISHNSFNGSIPNSIGKLVFLSHLDVGNNKLSRDIPNEIWNLRNLKYLALDLNNFNGSIIAQEIVKLYKIETLDLGDSGLSATSPILEELSKLGNLTYLSLTTCNLTEPIPSSIGKLVNLSYLNIVKNHIFGNIPQEIGKLRNLEYILLFANEISGHIPKEIGELVNLMELYLYENNLSGSIPREVGKLVNMEFLTLKANGFSGSIPQEIGMMTKMTVHDLSINSLSGKIPLSIGNLSNLSFLYLNYGNHLTGPIPKEVNCLTTFALVETGKLTKFAAMNNHLTDDFGVYPNLDYMGLSGNKFYGHLSPNWGKCYNLTSLIISNNNLSGGIPPELGKATNLHVLDLSSNHLTGKIPNELGSLTKLNKLMLSSNHLSGNVPVQIASLHDMETLELAENNLSGFITTQLAGLSKLWNLNLSQNKFKGKIPIEFGQFKALQILDLSGNLLGGTIPSMFSQLKYLETLNLSHNNLSGVIPSDFRQMLSLSYVDISYNQLEGPLPDIPAFHNTKIEALRNNKGLCGNVSGLEPCPRSSGETQNHKNNEVLLIVLPLTVGALILALVSFGVSKHLSQTSANEECQVAESQAQNIFAIWSFDGKMVYENIIEATEELDNKHLIGVGGQGSVYKAELHTGQVVAVKKLQSVPNEEISNLKAFRSEIQALTEIRHHFGTAKLLNPNSTNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVVALEILFGKHPGDVISSSLLSSSWTAVGDIMPLMDKYLDQRLPHPTNPIVKELVSIVRIAIACLIESPRSRPTMEQVAKELLISK. 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01610 888 Gene3D Transferase(Phosphotransferase) domain 1 759 888 - -
Seca1g01610 888 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 176 357 - -
Seca1g01610 888 Gene3D Ribonuclease Inhibitor 360 629 IPR032675 -
Seca1g01610 888 Pfam Leucine rich repeat N-terminal domain 38 57 IPR013210 -
Seca1g01610 888 Gene3D Phosphorylase Kinase; domain 1 660 758 - -
Seca1g01610 888 Gene3D Ribonuclease Inhibitor 28 173 IPR032675 -
Seca1g01610 888 FunFam Leucine-rich repeat receptor protein kinase MSP1 664 764 - -
Seca1g01610 888 SUPERFAMILY Protein kinase-like (PK-like) 682 884 IPR011009 -
Seca1g01610 888 SMART LRR_typ_2 525 548 IPR003591 -
Seca1g01610 888 SMART LRR_typ_2 256 280 IPR003591 -
Seca1g01610 888 SMART LRR_typ_2 184 208 IPR003591 -
Seca1g01610 888 SMART LRR_typ_2 109 133 IPR003591 -
Seca1g01610 888 SMART LRR_typ_2 549 572 IPR003591 -
Seca1g01610 888 SMART LRR_typ_2 453 477 IPR003591 -
Seca1g01610 888 Gene3D Ribonuclease Inhibitor 281 359 IPR032675 -
Seca1g01610 888 PANTHER LEUCINE RICH REPEAT KINASE 2 340 757 - -
Seca1g01610 888 PRINTS Leucine-rich repeat signature 549 562 - -
Seca1g01610 888 PRINTS Leucine-rich repeat signature 432 445 - -
Seca1g01610 888 Pfam Protein kinase domain 759 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01610 888 Gene3D Ribonuclease Inhibitor 174 277 IPR032675 -
Seca1g01610 888 SUPERFAMILY L domain-like 48 396 - -
Seca1g01610 888 ProSiteProfiles Protein kinase domain profile. 493 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01610 888 ProSiteProfiles Leucine-rich repeat profile. 551 572 IPR001611 GO:0005515
Seca1g01610 888 ProSiteProfiles Leucine-rich repeat profile. 431 453 IPR001611 GO:0005515
Seca1g01610 888 FunFam Leucine-rich repeat receptor-like protein kinase TDR 358 622 - -
Seca1g01610 888 Pfam Leucine rich repeat 527 586 IPR001611 GO:0005515
Seca1g01610 888 Pfam Leucine rich repeat 407 466 IPR001611 GO:0005515
Seca1g01610 888 SUPERFAMILY RNI-like 272 600 - -
Seca1g01610 888 FunFam Nuclear pore complex protein NUP107 27 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01610 Seca-Chr1 26692618 26705093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01610 32 758 Receptor kinase-like Gene Family AT4G08850 38.028 5.91e-152 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g01610 Pkinase 2.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01610 - - psat:127129328 719.153