Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01609 ATGCCGGCTGGTCATGGTTTGAGATCTCGCACCAGAGATTCCTTTTCTCGACCATTCAGGAAGAAGGGTACCATTGCCCTCACCACCTACCTCAGGACCTACCACATCGGCGACTATGTCGACATCAAGGTTAACGGCGCCGTCCATAAGGGTATGCCTCACAAGTTCTACCATGGCCGCACCGGACGTGTCTGGAATGTCACCAAACGCGCCATTGGCGTCGAAGTCAACAAGCAGCAGGTTGGGAACAGAATAATCAGAAAGAGGATTCATGTCCGTGTGGAGCATGTGATGCCTTCAAGGTGTACTGAGGAGTTCCGGCTGAGGAAGGTCAAGAATGATCAACTTAAGGCTGAGGCTAAGGCTAAGGGTGAGGTAATCAGCACCAAGAGACAGCCTCAAGGTCCTAAACCAGGTTTCATGGTTGAAGGAGCTACATTGGAGACTGTTACTCCAATTCCTTACGATGTCGTAAATGACCTCAAGGGAGGATACTAG 498 0.506 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKVKNDQLKAEAKAKGEVISTKRQPQGPKPGFMVEGATLETVTPIPYDVVNDLKGGY. 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01609 165 Gene3D - 100 157 - -
Seca1g01609 165 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Seca1g01609 165 FunFam 60S ribosomal protein L21 1 99 - -
Seca1g01609 165 FunFam 60S ribosomal protein L21 100 159 - -
Seca1g01609 165 Pfam Ribosomal protein L21e 1 102 IPR001147 GO:0003735|GO:0005840|GO:0006412
Seca1g01609 165 SUPERFAMILY Translation proteins SH3-like domain 3 100 IPR008991 -
Seca1g01609 165 PANTHER 60S RIBOSOMAL PROTEIN L21 1 164 IPR001147 GO:0003735|GO:0005840|GO:0006412
Seca1g01609 165 Gene3D Ribosomal protein L21 1 98 IPR036948 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01609 Seca-Chr1 26613929 26615658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01609 1 165 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 83.636 1.35e-103 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01609 K02889 - gmx:100305629 330.487