Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01608 ATGGAGGGGAAAGATGAAGATGTGAGAGTTGGAGCCAACAGGTACACGGAGAAGCAACCAATAGGAACAGCTGCTCAAACCCAAGATAGCAAAGACTACAAAGAGCCACCTCCAGCTCCTTTGTTTGAGGCTGGAGAGTTAACATCATGGTCTTTCTACAGAGCAGGCATAGCAGAGTTTGTGGCCACATTCTTGTTTCTTTATATCACAGTTTTGACTGTGATGGGTGTGGCCAAATCTCCCAGCAAGTGTTCCACTGTTGGTGTTCAAGGCATTGCTTGGTCATTTGGTGGAATGATCTTTGCTCTTGTCTATTGCACAGCTGGTATCTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGTTGTTTCTGGCACGCAAGTTATCTATGACTAGGGCAGTCTTTTACATAATTATGCAGTGCTTGGGAGCTATATGTGGTGCTGCTGTTGTTAAGGGATACCAATCAAACCAATTTGAGAGGCTTGGAGGTGGTGCCAACACTGTCAATAATGGATACTCCAAAGGTGCTGGCCTTGGAACAGAGATTGTTGGCACATTTGTTCTTGTTTATACTGTCTTCTCTGCTACAGATGCTAAGAGAAATGCTAGAGACTCACACGTTCCAATTTTGGCACCACTGCCTATTGGTCTTGCTGTCTTCCTGGTGCATTTAGCTACAATTCCTGTCACAGGGACGGGAATCAACCCAGCTAGAAGTTTAGGTGCAGCTCTTGTATACAACAAGGATCAAGCTTGGGATGATCATGTGAGTATTCATCCTTAA 789 0.4512 MEGKDEDVRVGANRYTEKQPIGTAAQTQDSKDYKEPPPAPLFEAGELTSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSPSKCSTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSMTRAVFYIIMQCLGAICGAAVVKGYQSNQFERLGGGANTVNNGYSKGAGLGTEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGLAVFLVHLATIPVTGTGINPARSLGAALVYNKDQAWDDHVSIHP. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01608 262 Pfam Major intrinsic protein 46 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g01608 262 NCBIfam MIP family channel protein 58 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g01608 262 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 258 IPR034294 -
Seca1g01608 262 SUPERFAMILY Aquaporin-like 46 252 IPR023271 -
Seca1g01608 262 Gene3D Glycerol uptake facilitator protein. 39 260 IPR023271 -
Seca1g01608 262 FunFam Probable aquaporin PIP1-2 39 261 - -
Seca1g01608 262 CDD MIP 54 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g01608 262 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Seca1g01608 262 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g01608 262 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g01608 262 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g01608 262 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g01608 262 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g01608 262 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01608 Seca-Chr1 26610825 26612518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01608 1 258 Major Intrinsic Protein MIP AT2G45960 82.558 4.44e-164 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01608 K09872 - gmx:100809467 482.256