Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01597 ATGACACACAATTGGGAACAAAATTGGAATGCTAAATCTAATTTGGTAGGACAAGCCTTGTCATTTAAGGTTACCACTAGTGATGGTAAAATGGTGGAATTTGATAATGTTGCCCCACCCCAATGGCAATTTGGACAGACCCACCAGGCTAAGAGCAATTTTTAG 165 0.4 MTHNWEQNWNAKSNLVGQALSFKVTTSDGKMVEFDNVAPPQWQFGQTHQAKSNF. 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01597 54 Gene3D - 1 54 IPR036749 -
Seca1g01597 54 PRINTS Expansin signature 36 52 IPR002963 GO:0009664
Seca1g01597 54 PRINTS Expansin signature 7 28 IPR002963 GO:0009664
Seca1g01597 54 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 1 50 IPR007117 -
Seca1g01597 54 PANTHER EXPANSIN-A15 1 51 IPR002963 GO:0009664
Seca1g01597 54 SUPERFAMILY PHL pollen allergen 1 49 IPR036749 -
Seca1g01597 54 Pfam Expansin C-terminal domain 1 39 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01597 Seca-Chr1 26361067 26361231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01597 1 54 Expansin Gene Family AT5G39280 55.556 3.41e-15 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01597 - - qsu:112027350 85.8853