Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01590 ATGCAATTGAGCCTTGAACAACTGAGATTAGCAGGCACTCTTACACCTTCCATAGGAAACCTCACATTCCTCACCACACTCAACTTGCTAAACAATAGCTTCCATGGTGAACTTCCTCAAGAGTTGGGTCGTTTACTATACTTGCAACATCTAAACATCAGCTTCAATAACTTTGGTGGGAGTATTCCAAGTAATCTAAGTCACTGTACAGAACTAAGAGTCCTTGCTGCTGGTGCTAACAATCTTAAAGGAACAATCCCAACTTGGATTGGAAATCTTTCTTCTTTGTCTAGAATTAGCTTTGGATTGAACAGTTTGCATGGAAGCATACCACAAGAGGTAGGTCGTTTATCAAGCTTGACATATTTTGTGCTATATGGGAATTATTTGTCTGGCACAGTTCCCTCTTCAATCTATAACATTTCTTCCTTATACTATTTTACTCTTACTCAAAACCATCTCCATGGAAACTTACCAGCTGATGTTGGATTTACTCTTCCTAATCTTGAAGTATTTGCTGGTGGGGTCAACAATTTCACAGGGACTGTTCCTGCATCATTGTTAAATGCATCAAAACTTGTAGTTCTTGACTTTTCTCTTAATGGTCTCACTGGAACACTGCCTAAGAACATAGGGGTCTTGCACCAGTTAACTAGACTTAGCTTTGAGCACAATAGACTTGGAACTGGGAAAACAGAAGATCTAAGCTTTCTTGATTCTTTGGTCAATTGCACTGCTCTACAAGTTCTACGTCTAGGTGGAAATAATTTTGGTGGAAAGTTGCCTAACTCAATTGCTAATTTCTCAACCCAATTGCATACATTAGCCATTAATTCCAATGGAATACAAGGAAATATACCTGTTGGGATTGGAAATCTTGCTAGCCTTGCCCTTCTAGGATTGGAAGGAAACCACTTAACTGGTAGAATTCCTGATACATTAGGTAAGCTGCAGAATCTACAAGAAGTGTATCTTAATGCCAACAAACTTTCAGGAAGAATCCCATCCTCTTTAGGAAATTTAACTTCATTAACAAAACTCCTTCTGGAGGGGAACAACTTTGAAGGAAGCATACCTTCTAGTCTTGGAAATTGTCAGAAGCTATTGGTACTTAGCCTTTATAGTAACAAGCTTAGTGGCACCATACCAAAAGAAGTCATTAGCCTTTCTTCACTAGCAATATACTTGGATGTGTCTCATAATGCTTTGTCAGGGACTCTGCCAGCTGAAGTAGGTAAGCTACATAATCTTGGAGGATTGGTGCTGTCTGAGAACAATTTTTCTGGAGTCATTCCATCTTCTCTTGGTAGCTGCATTAGCTTAGAATGTTTAGGTTTACAAGATATAGATCTTTCACGCAATAACCTGTCTGGTAAGATTCCTGAATTTCTTGGTGAGTTCACAGAGCTCAAGCATCTCAACCTTTCTTACAATAATTTTGAAGGTGAAATACCAAAGAATGGAATCTTCAAGAATGCAACTTCCATTTCCTTATATGGAAACAACAAGCTATGCGGTGGTATCCCAGAATTGAATTTTCCTGCATGCAATATCAGGAAAGCCTCTTTGGTAACAAAACTTCTTGCTCCTAAGGTGGCTATCCCTATAGCTATTGCACTGGTATTTGTACTCTTGCTATCATGTTTTCTTACATTATTCTCCATAGTAAGAAAAGCAAGAAAGAGAACTTCAAGATCAACTACTACTGCAAATGATTTGGCATTGGATATTTCTTACTCAGAAATTGTTAGGTGCACTGGCGGGTTCTCACAGGATAACTTGATTGGCTCGGGAAGTTTTGGTTCTGTATACAAAGGAACTCTTTCAGGTGATGGATCAATTGTTGCAGTTAAAGTATTGAATCTTCAACAAAGAGGAGCTTCAAGGAGCTTCATTGATGAATGCCAAGTTCTGAGAAGTATAAGGCACCGCAACCTTCTCAAGATCATAACTGCCATCTCAAGTGTTGATCATCAAGGTAATGACTTCAAAGCTCTAGTATTTGAGTTCATGTCTAATGGAAGTCTAGAAGATTGGTTGCATCCTATAAATAATATGCAATATCAGGTCAAGACATTGACATTTATCCAAAGATTGAACATTGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGATATAAAGCCAAGCAATGTTCTTCTTGACAATGATATGGATGCCCATGTTGGTGACTTTGGGTTAGCTACATTTCTGTTTGAAGACACAGCCAATTTTTCTAGACAACAATCAATTATGTCAGCTAGCCTAAGGGGTTCTATTGGAAGAAATGCAGAGTATGGCATGGGTGGCAAGCCTTCTACAGTTGGAGATATCTACAGTTATGGGATACTATTACTGGAGATTTTCACAGGAAAAAGACCAACAGATGAAGCATTTGAAGGTGGCATGGGAATTCACCAGTTTATATCAATGGCTTTACCTAACCATGTCATGGATATAATTGATCCTTCATTAGTCTCTGAAGAAGAATTTGTTGACATAAATGAAGAATTTGAAGGAGAAGAAAGAGCTATAAGGATTGATTGCATTGTATCACTTATGGAAATTGGAGTGTCTTGCTCTGCAACTGCACCAAGTGAACGGATGCCCATCAGTGTCATGAACAATTCTTGTGTAAACTCCAATAAAATTGTATTCCAATTCCTTTGTGGATTTCTCCTCTTATGCATGACTACATGCAAGGACTCTGCAACAGCATCAACCCTGCAAGGAAATGAAACTGATCTACATGCTTTACTTGACTTCAAGAGTAGGATAGTTCAAGATCCATTTCAAATCATGAGTTTATGGAATGATTCCATCCACCACTGCAACTGGGAAGGAATTACCTGCAACATCTCCAATGGAAGGGTCATGTATTTGATCCTTGAAGACCTTACCCTGGCAGGTACTGTTCCACCATCTATAGGAAATCTTACATTCCTCACCAGACTCAACATTAGGAATAGTAGTTTCCATGGAGAGTTTCCTCAAGAAGTTGGACATTTACTATACCTACAACATCTAAACATTAGTTACAATTCTTTTGGTGGTAGTATTCCAAGTAATCTAAGTCACTGCATAAAACTAAGTGTGTTATCTGCTGGTCATAACAAGTTCACTGGAACAATTCCAGCATGGATAGGAAATTCTTCTTCTTTATCTCTACTTAACCTTGCTGTGAACAACTTACATGGAAGAATACCTAATGAGGTAGGCAAATTATCAAGCTTGACACTTTTTGCACTAAATGGAAATTACTTGTCTGGAATAATTCCTCCTTCAATTTTTAACATTTCTGCATTGAACTTTTTCACTGTCTCTCAAAATCATCTGCATGGTAACATACCAGCTGATGTTGGTTTTACACTTCCTAATCTTGGAACATTTGCTGGTGGAGTCAACAATTTCACTGGAACAATTCCTGAATCTCTGTCAAATGCTTCAAGACTAGAAATTCTTGACTTTGCTGAAAATGGTCTCACTGGAACACTTCCTAAGAACATAGGGAGATTGCCCCATTTGAAAAGACTTAATTTTGATGAGAATAGACTTGGAACTGGGAAATCTGGTGACCTGAATTTTCTTGCTTTCTTGGTTAATTGTACTGCTCTTGAAGTTTTAGGCCTTGCTAGAAATGTTTTTGGAGGAGAATTGCCTAGCTCAATTGCTAATCTTTCAACCCAGTTGAATACACTCACATTAGGTCTGAATGCAATACATGGAAGTATTCCTCTAGGAATTGGGAACCTTGTTAACTTAACTGTTCTGGGATTGGAAGATAACAGCCTAAGTGGTTCTGTTCCTGATACAATAGGTATACTTCAAAAGTTAAATGATCTAGAATTGAATGGCAATAACTTTTCTGGGGTGATCCCTTCCTCCATGGGAAACTTGACAAGATTAACAATGCTACTCATGGAGGAGAACAACTTTGAAGGACATATACCAGAAAGTCTTGGAAAATGCCAGAGCTTGTTGATGCTAAATTTTAGCCATAATATGCTAAATGGTACCATACCAAGACATGTACTTACCTTGTATTCTCTTTCAATTTACCTGGACTTGTCTCATAATTCTTTGACAGGGTCTGTGCCAATTGAAGTGGGTAAGTTAGTCAATCTAGAATATTTGGACCTCTCAGAAAACAAATTGTCTGGCATGATTCCATCCTCTCTTGGCAGCTGTATTAGTTTGGAATGGTTGCATTTGCAAGGTAACTTCTTTGAGGGAAACATTCCTTCAAATTTAGAGAATTTGAGAGGTTTACAAGATATAGATCTGTCACACAATAACTTGTCCGGGAAGATTCCTGAATTTCTTGGTGAGTTCAAAGTGCTCATGCATCTCAATCTTTCTTACAATGATTTTGAGGGCAATATACCAACAAATGGAATATTCAAGAATGCAACTTCCTTTTCATTGTATAGAAACAGCAAGCTTTGTGGTGGTGTCCCAGAGCTAAATTTACCTGCATGCACTATCAAAAAAGCCTCTTCCTTTGGAAAATTTCATGGCCCCAAGGTGGTTATCCTTGTAGTTAGTACATTTGTATTTGTACTCTTTCTATCTTGTTTTCTGACAACCTTCATGGTAAAAAGATCAAGAAAGAAAACTTCAAGAGCAACAACTACAAATGATTTGGAATTGGATATTTCTTACTTAGAAATTGCTAGGTGCACTGGAGGGTTCTCTCAGGATAACTTGATTGGCTCAGGAAGTTTTGGTTCTGTGTACAAAGGAACCCTTTCAAGTGATGGATCAATTATTGCAATTAAAGTATTGAATCTTGAACAAAGAGGAGCTTCAAAAAGCTTCATTGATGAATGCCAAGTTCTGAGAAATATAAGGCACCGCAACCTTCTTAAGGTCATAACTGCTATCTCAAGCATTGATCATCAAGGTAATGACTTCAAAGCTCTAGTGTTTGAGTTCATGTCTAATGGTAGTCTAGAAGATTGGTTACATCCTATAAATAATCTTCAAAATCAGACAAAGACATTGTCATTTCTCCAAAGAATGAACATAGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGATATAAAGCCAAGCAATGTACTTCTTGACAATGATATGGTAGCCCATGTTGGTGACTTTGGATTAGCAACATTTTTGTTTGAAGAATCATGCAATTCTCCCAAACATTCAACTATGTCAGCTAACCTAAAGGGCTCTATTGGGTACATCCCTCCAGGTATACATGTCTTTCACTCACTATCTTATTTCTTGTGA 5322 0.3792 MQLSLEQLRLAGTLTPSIGNLTFLTTLNLLNNSFHGELPQELGRLLYLQHLNISFNNFGGSIPSNLSHCTELRVLAAGANNLKGTIPTWIGNLSSLSRISFGLNSLHGSIPQEVGRLSSLTYFVLYGNYLSGTVPSSIYNISSLYYFTLTQNHLHGNLPADVGFTLPNLEVFAGGVNNFTGTVPASLLNASKLVVLDFSLNGLTGTLPKNIGVLHQLTRLSFEHNRLGTGKTEDLSFLDSLVNCTALQVLRLGGNNFGGKLPNSIANFSTQLHTLAINSNGIQGNIPVGIGNLASLALLGLEGNHLTGRIPDTLGKLQNLQEVYLNANKLSGRIPSSLGNLTSLTKLLLEGNNFEGSIPSSLGNCQKLLVLSLYSNKLSGTIPKEVISLSSLAIYLDVSHNALSGTLPAEVGKLHNLGGLVLSENNFSGVIPSSLGSCISLECLGLQDIDLSRNNLSGKIPEFLGEFTELKHLNLSYNNFEGEIPKNGIFKNATSISLYGNNKLCGGIPELNFPACNIRKASLVTKLLAPKVAIPIAIALVFVLLLSCFLTLFSIVRKARKRTSRSTTTANDLALDISYSEIVRCTGGFSQDNLIGSGSFGSVYKGTLSGDGSIVAVKVLNLQQRGASRSFIDECQVLRSIRHRNLLKIITAISSVDHQGNDFKALVFEFMSNGSLEDWLHPINNMQYQVKTLTFIQRLNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMDAHVGDFGLATFLFEDTANFSRQQSIMSASLRGSIGRNAEYGMGGKPSTVGDIYSYGILLLEIFTGKRPTDEAFEGGMGIHQFISMALPNHVMDIIDPSLVSEEEFVDINEEFEGEERAIRIDCIVSLMEIGVSCSATAPSERMPISVMNNSCVNSNKIVFQFLCGFLLLCMTTCKDSATASTLQGNETDLHALLDFKSRIVQDPFQIMSLWNDSIHHCNWEGITCNISNGRVMYLILEDLTLAGTVPPSIGNLTFLTRLNIRNSSFHGEFPQEVGHLLYLQHLNISYNSFGGSIPSNLSHCIKLSVLSAGHNKFTGTIPAWIGNSSSLSLLNLAVNNLHGRIPNEVGKLSSLTLFALNGNYLSGIIPPSIFNISALNFFTVSQNHLHGNIPADVGFTLPNLGTFAGGVNNFTGTIPESLSNASRLEILDFAENGLTGTLPKNIGRLPHLKRLNFDENRLGTGKSGDLNFLAFLVNCTALEVLGLARNVFGGELPSSIANLSTQLNTLTLGLNAIHGSIPLGIGNLVNLTVLGLEDNSLSGSVPDTIGILQKLNDLELNGNNFSGVIPSSMGNLTRLTMLLMEENNFEGHIPESLGKCQSLLMLNFSHNMLNGTIPRHVLTLYSLSIYLDLSHNSLTGSVPIEVGKLVNLEYLDLSENKLSGMIPSSLGSCISLEWLHLQGNFFEGNIPSNLENLRGLQDIDLSHNNLSGKIPEFLGEFKVLMHLNLSYNDFEGNIPTNGIFKNATSFSLYRNSKLCGGVPELNLPACTIKKASSFGKFHGPKVVILVVSTFVFVLFLSCFLTTFMVKRSRKKTSRATTTNDLELDISYLEIARCTGGFSQDNLIGSGSFGSVYKGTLSSDGSIIAIKVLNLEQRGASKSFIDECQVLRNIRHRNLLKVITAISSIDHQGNDFKALVFEFMSNGSLEDWLHPINNLQNQTKTLSFLQRMNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESCNSPKHSTMSANLKGSIGYIPPGIHVFHSLSYFL. 1774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01590 1773 Gene3D Ribonuclease Inhibitor 1073 1133 IPR032675 -
Seca1g01590 1773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1706 1718 IPR008271 GO:0004672|GO:0006468
Seca1g01590 1773 SUPERFAMILY RNI-like 1094 1474 - -
Seca1g01590 1773 SUPERFAMILY L domain-like 923 1197 - -
Seca1g01590 1773 ProSiteProfiles Protein kinase domain profile. 589 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01590 1773 ProSitePatterns Protein kinases ATP-binding region signature. 1581 1604 IPR017441 GO:0005524
Seca1g01590 1773 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 963 1204 - -
Seca1g01590 1773 Pfam Protein kinase domain 590 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01590 1773 Pfam Protein kinase domain 1576 1761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01590 1773 Gene3D Phosphorylase Kinase; domain 1 1537 1656 - -
Seca1g01590 1773 Gene3D Phosphorylase Kinase; domain 1 551 670 - -
Seca1g01590 1773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 720 732 IPR008271 GO:0004672|GO:0006468
Seca1g01590 1773 Pfam Leucine Rich Repeat 48 69 IPR001611 GO:0005515
Seca1g01590 1773 Pfam Leucine Rich Repeat 1017 1038 IPR001611 GO:0005515
Seca1g01590 1773 Gene3D Ribonuclease Inhibitor 1 235 IPR032675 -
Seca1g01590 1773 Gene3D Ribonuclease Inhibitor 236 516 IPR032675 -
Seca1g01590 1773 Gene3D Ribonuclease Inhibitor 1205 1506 IPR032675 -
Seca1g01590 1773 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 671 895 - -
Seca1g01590 1773 ProSiteProfiles Protein kinase domain profile. 1575 1773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01590 1773 SUPERFAMILY Protein kinase-like (PK-like) 1550 1765 IPR011009 -
Seca1g01590 1773 ProSitePatterns Protein kinases ATP-binding region signature. 595 618 IPR017441 GO:0005524
Seca1g01590 1773 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1657 1770 - -
Seca1g01590 1773 FunFam Leucine-rich repeat protein kinase family protein 89 233 - -
Seca1g01590 1773 Gene3D Transferase(Phosphotransferase) domain 1 1657 1770 - -
Seca1g01590 1773 Gene3D Transferase(Phosphotransferase) domain 1 671 896 - -
Seca1g01590 1773 Gene3D Ribonuclease Inhibitor 922 1072 IPR032675 -
Seca1g01590 1773 SUPERFAMILY Protein kinase-like (PK-like) 568 881 IPR011009 -
Seca1g01590 1773 SUPERFAMILY L domain-like 3 227 - -
Seca1g01590 1773 FunFam LRR receptor-like serine/threonine-protein kinase EFR 560 670 - -
Seca1g01590 1773 SMART LRR_typ_2 1262 1286 IPR003591 -
Seca1g01590 1773 SMART LRR_typ_2 1310 1334 IPR003591 -
Seca1g01590 1773 SMART LRR_typ_2 1086 1110 IPR003591 -
Seca1g01590 1773 SMART LRR_typ_2 1014 1038 IPR003591 -
Seca1g01590 1773 SMART LRR_typ_2 1383 1407 IPR003591 -
Seca1g01590 1773 SMART LRR_typ_2 1183 1206 IPR003591 -
Seca1g01590 1773 SMART LRR_typ_2 293 317 IPR003591 -
Seca1g01590 1773 SMART LRR_typ_2 341 365 IPR003591 -
Seca1g01590 1773 SMART LRR_typ_2 1431 1455 IPR003591 -
Seca1g01590 1773 SMART LRR_typ_2 467 492 IPR003591 -
Seca1g01590 1773 SMART LRR_typ_2 389 414 IPR003591 -
Seca1g01590 1773 Gene3D Ribonuclease Inhibitor 1134 1204 IPR032675 -
Seca1g01590 1773 SMART serkin_6 1575 1772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01590 1773 SMART serkin_6 589 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01590 1773 Pfam Leucine rich repeat N-terminal domain 924 963 IPR013210 -
Seca1g01590 1773 FunFam LRR receptor-like serine/threonine-protein kinase EFR 234 522 - -
Seca1g01590 1773 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1205 1510 - -
Seca1g01590 1773 SUPERFAMILY RNI-like 166 510 - -
Seca1g01590 1773 PRINTS Leucine-rich repeat signature 1431 1444 - -
Seca1g01590 1773 PRINTS Leucine-rich repeat signature 1386 1399 - -
Seca1g01590 1773 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1546 1656 - -
Seca1g01590 1773 PANTHER OS04G0122200 PROTEIN 3 122 - -
Seca1g01590 1773 Pfam Leucine rich repeat 1365 1418 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01590 Seca-Chr1 26121115 26135795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01590 2 898 Receptor kinase-like Gene Family AT3G47570 43.038 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca1g01590 Pkinase 5.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01590 - - cpep:111791563 1752.64