LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g01586	ATGGTGGCAGAGCGGAGTTTGGTTGAGGAGGGGCCTAAGCCCGCTGTGAAGGCTTGGGTGGACGAGAAGAAAAAAAAAGAGAAGATGCACCTACCGGGAGGAACGCTTGGGCACACTTTCAGGGAGGCAAGGGCAAACAGGTTGCTCTCCCCTCCACTCACAGCACTCCCACTTGCTCTAAGTGTGGCAAGGGTCACCGAGGGGAGGGCCTTTGAGGTTGATTTGATTTGTTTACCCTTAAGTGGCATAGATATTATTTTGGGCATGAACCGGTTGTCCCACAATCAGGTCATGCTTGACTCTTTCAATAAAGAAGTTGTTATTTTGGAGGAGTTTAGAAACCTTAGGCTGGAAGTGAGTATTGAGGGAAACAGTTTGAGACTTTTCAGATTAGAGTCCAGTAACACCTATTTGCTTTGTGCTTGGATAAACCCTTCCATTGCAATGCTAGTAGATCACTATCACCATCACTACCTCTCGTCGGCGATCCATCAGACTTCTGTCTCCGACGCCGGATTTCTTACCTCTAGTGGCTTCTCTAGCTTCCACACACCAGCACGAATTCAGGGTGAAGAGGAACATGACAACGTATCTGACAATTCATCCTCTGCTTCTCGCCATGGATGGAAATACACATGA	639	0.4789	MVAERSLVEEGPKPAVKAWVDEKKKKEKMHLPGGTLGHTFREARANRLLSPPLTALPLALSVARVTEGRAFEVDLICLPLSGIDIILGMNRLSHNQVMLDSFNKEVVILEEFRNLRLEVSIEGNSLRLFRLESSNTYLLCAWINPSIAMLVDHYHHHYLSSAIHQTSVSDAGFLTSSGFSSFHTPARIQGEEEHDNVSDNSSSASRHGWKYT.	213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g01586	212	Pfam	Retroviral aspartyl protease	65	111	-	-
	Seca1g01586	212	MobiDBLite	consensus disorder prediction	190	212	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g01586	Seca-Chr1	25940433	25941617	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g01586	131	207	TCP Transcription Factor Family	AT1G53230	35.556	5.95e-07	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g01586	-		-	vvi:100248756	86.2705