Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01585 ATGATTAGCAATTGCTTTGGTTCGTTGAATTGGTGTAAAGGAAGGGGTGATCCTGCTGACCAGCCACATGAACAAGTGATTGCAACTAAAGCATTTAGCTTTAACTCATTGAGATCTGCAACGGATGATTTTCATCCTTCATGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAAGTTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAAGGAACTCATGAATTTATGACAGAAATTGATATTATATCAAATACACAACATCCAAATCTTGTGAAACTAATTGGCTGCTGTGTTGAGGGCAGTCATCGAATATTGGTGTATGAATTTCTCCAGAACAATAGTCTTGCGAGTTCTTTGCTTGGTTCAAAAAGTAAATATGTTGCTTTGGATTGGGCAAAGAGAGCTGCTATTTGCCGTGGTACAGCTTCTGGTCTAAGCTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGAGATATCAAGGCCAGTAACATATTGCTGGATGAGAGCTTTAATCCAAAAATTGGGGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTAGAGTTGCAGGAACAATGGGATATCTTGCACCAGAATATGCACTTCTAGGACAGCTTACAAAGAAGGCAGATGTATACAGTTTTGGGATACTCATGCTTGAAATAATCAGCGGTAAAAGTAGTAGCAAAGCTGCATTTGGAGATAATATTTTGGTTCTGGTGGAATGGGTATATTTCTGGATTCTTGAGTATGAATAA 810 0.3877 MISNCFGSLNWCKGRGDPADQPHEQVIATKAFSFNSLRSATDDFHPSCKIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTHEFMTEIDIISNTQHPNLVKLIGCCVEGSHRILVYEFLQNNSLASSLLGSKSKYVALDWAKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDESFNPKIGDFGLAKLFPDNVTHVSTRVAGTMGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSKAAFGDNILVLVEWVYFWILEYE. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01585 269 Pfam Protein kinase domain 47 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01585 269 FunFam Lectin-domain containing receptor kinase A4.3 120 267 - -
Seca1g01585 269 FunFam cold-responsive protein kinase 1 15 119 - -
Seca1g01585 269 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 261 - -
Seca1g01585 269 ProSiteProfiles Protein kinase domain profile. 44 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01585 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Seca1g01585 269 SMART serkin_6 44 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01585 269 Gene3D Phosphorylase Kinase; domain 1 17 119 - -
Seca1g01585 269 Gene3D Transferase(Phosphotransferase) domain 1 120 267 - -
Seca1g01585 269 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Seca1g01585 269 SUPERFAMILY Protein kinase-like (PK-like) 24 264 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01585 Seca-Chr1 25920723 25926695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01585 27 262 Receptor kinase-like Gene Family AT1G53430 56.780 8.07e-91 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g01585 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01585 - - gmx:100785766 447.203