Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01578 ATGTTTTATGAACTTAAACAGTTACATTACATTGATATTTTCCAACTGAATTCTGACTCATACAGTTTGGAACAGAGTGATTGTGGCAATAAACAAATCAAGTTAGGAGGAGAATTCGTGAGAGCGAAACCTTTTAAGCAGCCACCTAAGCAAGACTATATACACGTGAGAGCGAGAAGAGGCCAAGCTACCGATAGCCACAATCTCGCTGAGAGAGTATGTAGCAGTAATTCACTTTTTCCTTCCTTCCTGAGCTTGAGTTGTTTCTTTGATCCTCACATTACCTGTTTTGGCAGGCAAGATGAGAAAAGATCAGTGAGAGGATGA 327 0.4006 MFYELKQLHYIDIFQLNSDSYSLEQSDCGNKQIKLGGEFVRAKPFKQPPKQDYIHVRARRGQATDSHNLAERVCSSNSLFPSFLSLSCFFDPHITCFGRQDEKRSVRG. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01578 108 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 73 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01578 Seca-Chr1 25745854 25746477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01578 46 73 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 82.143 5.66e-10 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01578 - - jre:108989775 62.3882