Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01568 ATGACATTCAAGCGCAGGAATGGAGGCCGTAACAAACATGGCCGTGGCCACGTCAAATTCATTCGATGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCAATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCGGTTAGAGATGTTCAGGAGGCCTGTGTCTATGACCAATACACTCTTCCTAAGCTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCCATCCACTCTCATGTTGTGAGGGTTCGATCTCGCACTGATAGGAGGAAGCGTGACCCCCCACAGCGCTTCATCAGGCGCAGGGATGATGCACCTAGGCCTGGTCAGCCTGGTCAAGCACCTCGTCCTGCTGGAGTAGGAGCCCCTGCCCGTGCCTAA 390 0.5333 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPRPGQPGQAPRPAGVGAPARA. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01568 129 FunFam 40S ribosomal protein S26 1 114 - -
Seca1g01568 129 Pfam Ribosomal protein S26e 1 106 IPR000892 GO:0003735|GO:0005840|GO:0006412
Seca1g01568 129 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Seca1g01568 129 MobiDBLite consensus disorder prediction 86 129 - -
Seca1g01568 129 PANTHER 40S RIBOSOMAL PROTEIN S26 1 122 IPR000892 GO:0003735|GO:0005840|GO:0006412
Seca1g01568 129 Gene3D Ribosomal protein S26e 1 114 IPR038551 -
Seca1g01568 129 MobiDBLite consensus disorder prediction 90 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01568 Seca-Chr1 25615294 25617611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01568 1 116 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 83.621 2.23e-69 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01568 K02976 - gmx:100781822 212.616