Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01561 ATGGAGGATCATAGAATGGCAATTGAGGAGCTTGTGAGAGGACGTGAGTTTGCTAATCAGCTTCGACAAGTCATCAGTGGTGATGATGAGTCAACAATAGGAACTCCATTTGCTCAACATCTTGTGAAGAACGTGCTCAGATCCTTCACCAACACCATCTTCCTTTTGGACAAATCGCATGAGGTTTCTCATCAGATGCAAAAAAGGGACTCTTCCTTGATTAGTACTCCTGCTAAATCTGAAGACTCTCAAGAAAGATGTAGGAGTTCCACCGATAAGTGCAGAAGAGGGTGTTACAAGAGAAGGAATATATGCAGAAAAACTACACAAACATATTGGGAGAAGGTGTCAGAAATTCCAGAAGATGATGGCCATGTATGGAGAAAATATGGCCAAAAGGAAATCCTTAATGCCAAATACTCAAGGAGCTACTACAGGTGCACTCACAAGTTTGATCAGAGATGCCAAGCAACAAAACAAGTGCAGAGAATTCAAGAGAAGCCTCCATTGTATAAGACTATCTATTATGGCCAGCACACTTGCAAAAACACCTTAAACCCTGACATCATACTTGATCCCAATTCTCCTTCTGACACTTCCATTTTGCTTAGTTTTAACAACACCTTCCCAACTCCAACTCCAACCAAACAAGACTGCCCCTTTGTATCATCATCTCCTCCCTCACAATCAGAGAACAAGGAATGTAAGGAGGATGTTTCCTCATCTTCCTTATTGGATGATCAATATTACCTGCTCTCCCCTGAGCCAACTACTTTTGATAATTTGACAAGGCATGTCACTCTATCATCGACCCTTGAATCCGATAACAGGGATCTGTTTTCTAGTTTCTTGTGTGATTCTGTTGTGTTTGATGATGTTTTTCAGCCTTTTGTTCAATTTTGA 903 0.4097 MEDHRMAIEELVRGREFANQLRQVISGDDESTIGTPFAQHLVKNVLRSFTNTIFLLDKSHEVSHQMQKRDSSLISTPAKSEDSQERCRSSTDKCRRGCYKRRNICRKTTQTYWEKVSEIPEDDGHVWRKYGQKEILNAKYSRSYYRCTHKFDQRCQATKQVQRIQEKPPLYKTIYYGQHTCKNTLNPDIILDPNSPSDTSILLSFNNTFPTPTPTKQDCPFVSSSPPSQSENKECKEDVSSSSLLDDQYYLLSPEPTTFDNLTRHVTLSSTLESDNRDLFSSFLCDSVVFDDVFQPFVQF. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01561 300 Gene3D WRKY domain 107 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g01561 300 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 217 IPR044810 GO:0003700
Seca1g01561 300 Pfam WRKY DNA -binding domain 122 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01561 300 ProSiteProfiles WRKY domain profile. 122 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01561 300 SUPERFAMILY WRKY DNA-binding domain 117 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g01561 300 MobiDBLite consensus disorder prediction 213 235 - -
Seca1g01561 300 SMART WRKY_cls 121 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01561 300 MobiDBLite consensus disorder prediction 213 230 - -
Seca1g01561 300 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01561 Seca-Chr1 25532497 25534776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01561 7 181 WRKY Transcription Factor Family AT3G56400 39.227 1.14e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g01561 WRKY 1.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01561 - - aprc:113861812 284.263