Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01558 ATGGGGTTTGGTCTCAAAAGAAGGAAGAAAGAAGAAGGAGGAGAAAAGATGCGCAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATCCAGTTTGCTAATACACTAGCTTCTGACTATCCAAGTGATCAGGATGGTGCCTGCCTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAATTCTTCCTTTTTCTGGTTCAGTGGACTGACTGTCACCTTGCTGGAGCCTTGGGATTTCTTAGAATTCTTATATACAAGTGTTTGTCACAGGCATATCAGGATGGGAAGACAACTATGTCTATTTATGAAAGAAAAGCCAGTCTGAAGGAGTTTTATGGTGTGGTCTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGAAGACAGGAAACAGAAACATCTATGTGCTACCAGGTACAAGCCTAAAGATTCAACAAGCAAAGGAAAGCTCTCTGAAGTTGACATGGAGAGAGAAGAAGAGTGTGGTATTTGCATGGAGATGAACAGCAAGGTTGTATTGCCCAATTGCAATCATTCAATGTGTATGAAATGCTACCGAGACTGGCATGCAAGATCTCGATCTTGCCCTTTCTGCAGGGACAGTCTTAAAAGAGTGAACTCTGGTGACCTGTGGATCTACATGAACAGCCGTGAGATAGATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGACTATTTTTGTACATAGAAAAGTTGCCTCTTGTTGCCAGACCCTATATTCATGTCATATCGTCACAACTGGCCATTGCCACTTAG 795 0.4252 MGFGLKRRKKEEGGEKMRKSFKDSLKALEADIQFANTLASDYPSDQDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGFLRILIYKCLSQAYQDGKTTMSIYERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLCATRYKPKDSTSKGKLSEVDMEREEECGICMEMNSKVVLPNCNHSMCMKCYRDWHARSRSCPFCRDSLKRVNSGDLWIYMNSREIDDLASINKENLKRLFLYIEKLPLVARPYIHVISSQLAIAT. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01558 264 SMART ring_2 166 203 IPR001841 -
Seca1g01558 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 213 IPR013083 -
Seca1g01558 264 SUPERFAMILY RING/U-box 154 209 - -
Seca1g01558 264 FunFam RING/U-box superfamily protein 147 213 - -
Seca1g01558 264 ProSiteProfiles Zinc finger RING-type profile. 166 204 IPR001841 -
Seca1g01558 264 PANTHER RING FINGER PROTEIN 41, 151 19 248 - -
Seca1g01558 264 Pfam Zinc finger, C3HC4 type (RING finger) 163 209 - -
Seca1g01558 264 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01558 Seca-Chr1 25346579 25349984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01558 110 208 C3H Transcription Factor Family AT5G01960 28.846 1.11e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01558 K25840 - gmx:100814293 433.335