Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01554 ATGGCAGGTCCAGAAGTTGCAAATGGGAACGGCTCATTGAACTTGAAACCAAGTGACACCAAAGGAAAGACCATTACTTGCAAAGCTGCGGTTGCATATGGTCCGGGACAACCCTTCATGGTGGAACAAATTCTTGTTCATCCTCCTCAGAAATTGGAGGTTCGAATCAAGATTCTCTTTACTTCAATTTGTCACACTGATCTCAGCGCTTGGAACGGCGAGAATGAGTCTCAGCGTGCTTATCCTCGGATTTTTGGGCATGAAGCTTCCGGGGTTGTGGAGAGTGTGGGGGAAGGTGTGAGTGATATGGAAGAAGGGGATATTGTGGTGCCAATATTCAATGGGGAGTGTGGGGAGTGTAGCTATTGCAAGTGTGAGAAAACCAACATGTGTGAGAGGTTTGGGGTGAACCCCATGAAAAAAGTGATGTATGGAGACGGCAAAAGTAGATTCTCCACCATGGATGGAAAACCCATCTTCCATTTCTTGAACACTTCTACCTTCACAGAGTACACGGTGCTGGACTCAGCATGTGTTGTTAAGTTCCACCCTGAACACAATCTCAGCCTCAAAAACCTCACCTTGCTCAGCTGCGGAGTTTCCACAGGAATGGGAGCTGCTTGGAATACTGCAAATGTGCATGTTGGTTCATCTGTAGCAGTCTTTGGTTTAGGTGCTGTTGGCCTCGCTGTTGCAGAAGGGGCACGAGCCAGAGGTGCTTCAAAAATAATAGGTGTGGACATCAACTCAGACAAATTCGTCACAGCCCGAGCAATGGGAATCACAGACTTCATAAATCCAAGGGATGAAGAGAAGCCAGTATATGAGAGAATCAGAGAAATGACTGGAGGAGGTGTACACTACAGTTTTGAATGTACAGGAAACTTGAACGTTTTAAGGGATGCCTTCTTGTCTGCTCATGAGGGTTGGGGGTTGACTGTAGTATTGGGAATTCATACATCACCAAAGTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAGAATTGTAGGATCAGTCTTTGGAGGTGTCAAAGGGAAAAGTCAATTGCCTCATCTCGCCACAGAATGCATACATAGAGAGGTGAAGCTGGATAATTTCATCACTCACGAGCTTCCCTTTGAGGAGATAAACAAAGCCTTCGATCTTTTGGTCACTGGGAAGTCACTGAGATGCCTTCTGCACCTCTAA 1197 0.4645 MAGPEVANGNGSLNLKPSDTKGKTITCKAAVAYGPGQPFMVEQILVHPPQKLEVRIKILFTSICHTDLSAWNGENESQRAYPRIFGHEASGVVESVGEGVSDMEEGDIVVPIFNGECGECSYCKCEKTNMCERFGVNPMKKVMYGDGKSRFSTMDGKPIFHFLNTSTFTEYTVLDSACVVKFHPEHNLSLKNLTLLSCGVSTGMGAAWNTANVHVGSSVAVFGLGAVGLAVAEGARARGASKIIGVDINSDKFVTARAMGITDFINPRDEEKPVYERIREMTGGGVHYSFECTGNLNVLRDAFLSAHEGWGLTVVLGIHTSPKLLPIHPMELFDGRRIVGSVFGGVKGKSQLPHLATECIHREVKLDNFITHELPFEEINKAFDLLVTGKSLRCLLHL. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01554 398 Gene3D - 30 393 - -
Seca1g01554 398 Gene3D - 203 341 - -
Seca1g01554 398 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 188 357 IPR036291 -
Seca1g01554 398 PANTHER ALCOHOL DEHYDROGENASE 22 395 - -
Seca1g01554 398 FunFam Alcohol dehydrogenase 6 30 216 - -
Seca1g01554 398 Pfam Zinc-binding dehydrogenase 226 346 IPR013149 -
Seca1g01554 398 SUPERFAMILY GroES-like 347 397 IPR011032 -
Seca1g01554 398 SUPERFAMILY GroES-like 20 214 IPR011032 -
Seca1g01554 398 FunFam S-(hydroxymethyl)glutathione dehydrogenase 203 341 - -
Seca1g01554 398 Pfam Alcohol dehydrogenase GroES-like domain 53 147 IPR013154 -
Seca1g01554 398 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 86 100 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01554 Seca-Chr1 25217786 25228811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01554 53 340 Monolignol Biosynthesis Gene Families AT4G39330 26.059 2.44e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01554 K00001 - gmx:100787307 627.476