Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01552 ATGGGTTCTCACCAACAAGAACCATGGATGTTGGAAAATGGAACCTTGAAGGGTTTGAGCAGGGAGAAGAGGCATGGACGCTCAGTACATAACATGTCCTCTTCTTCCTTGCGCAAGAAATCTGATATGACTCTTGTGTCAAAGGTTCGATGTGCTTTGCTTAGAAACTTTCTTGTTAACATCCAAGAGGTTATTCTTGGAACCAAGCTTTCCATTCTCTTCCCTGCTATCCCTGCTGCTATCATTGCTGAATGCTATGGGTTTGGAAGGTCCTGGGTTTTTGTATTGAGCTTGCTTGGACTTACCCCACTTGCTGAACGTGTTAGCTTCCTCACAGAACAAGTTACCTATTACACAGGTCCAACAGTTGGAGGACTTCTAAATGCTACATGTGGGAATGTCACTGAGCTTATAATAGCAATATTTGCTCTTAGCACAAACAAAATTGCTGTTGTCAAGTATTCTCTCTTGGGTTCCATCCTTTCAAACCTTCTTTTGGTTCTTGGAACCTCTCTATTCTGTGGTGGCATTGCAAACCTTAGACTGGAACAGAAATATGACAGAAGACAAGCAGATGTTAACTCACTCATGTTGCTGCTTGCATTGTTGTGCCACTTGCTTCCAATGCTGTTCAGATTTAGTTCTTCTTCTGCTGCTCTCACTGCAGAGTCATCACTCAATTTGTCTAGAGCTTCTAGTATTGTGATGATGCTTGCATATCTTGCTTACCTTGTCTTTCAACTATGGACACACAGGCAATTATTTGAAGCTGAAGATGAAGATGAAGATGGCAACAATGCTTCAGAAGAACAAGCTGTGATTGGATTCTGGAGTGGCTTTGCTTGGTTGGTTGGAATGACTGTGTTCATTGCTTTGTTATCTGAATATGTGGTGGATACAATTGAGGATGCATCTGATTCATGGGGTCTGTCTGTTAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGAAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATCTCATTAGGTGTTGCATTGGGTTCAGCAACACAAATTGGCATGTTTGTGGTTCCCCTATGTGTGATTGTGTCTTGGATAATGGGTGTCAAAATGGACCTGAACTTCAACCTCTTAGAGACAGGTTCTCTTGCTTTGGCAATAATAGCCACAAGCTTTACTTTACAGGTATATTAA 1203 0.4181 MGSHQQEPWMLENGTLKGLSREKRHGRSVHNMSSSSLRKKSDMTLVSKVRCALLRNFLVNIQEVILGTKLSILFPAIPAAIIAECYGFGRSWVFVLSLLGLTPLAERVSFLTEQVTYYTGPTVGGLLNATCGNVTELIIAIFALSTNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANLRLEQKYDRRQADVNSLMLLLALLCHLLPMLFRFSSSSAALTAESSLNLSRASSIVMMLAYLAYLVFQLWTHRQLFEAEDEDEDGNNASEEQAVIGFWSGFAWLVGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIGMFVVPLCVIVSWIMGVKMDLNFNLLETGSLALAIIATSFTLQVY. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01552 400 Gene3D - 121 261 IPR044880 -
Seca1g01552 400 Gene3D - 265 399 IPR044880 -
Seca1g01552 400 Pfam Sodium/calcium exchanger protein 279 393 IPR004837 GO:0016020|GO:0055085
Seca1g01552 400 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Seca1g01552 400 NCBIfam calcium/proton exchanger 76 392 IPR004798 GO:0006816|GO:0015369
Seca1g01552 400 NCBIfam calcium/proton exchanger 56 398 - -
Seca1g01552 400 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 23 398 IPR004713 GO:0006812|GO:0008324|GO:0016020
Seca1g01552 400 FunFam Vacuolar cation/proton exchanger 121 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01552 Seca-Chr1 25178346 25182473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01552 7 399 Antiporters AT3G51860 73.827 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01552 K07300 - gmx:100816231 629.017