Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01548 ATGCTAGAGGGCGAGAACGGAGACAGATGTGGTGGTGGAGGCGCAGCATGTGGGGAGAAGGCACCTGAAGCGCACATAGCTGAACTGAGTGAAGTCAACAAAGACTATACTGCGTACAAGATAACAGAGCAGATGCCTGTAAGTTTAGTTATCTTTGTTTGTTATCCTCCTGTAAATGAGATAATTGAACAATGCAGAAAGTTCCATTTGCTTGACCGATTGTTAGAATGGTTATTCTCACGGAATCACAAAATCCAGGACTTCAATGATGAAAACAGCAATTGCATAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATCAATCTCACTGTAGCTAACACTTGCATTATTTATGACATTGACTTGAATCCTCAAATGGATTTACAGGCCATGGATAGATGCCATATTGGTCCCATGTTAAAGAGCTTTCAACAAGTTAAAGCTTGA 453 0.4106 MLEGENGDRCGGGGAACGEKAPEAHIAELSEVNKDYTAYKITEQMPVSLVIFVCYPPVNEIIEQCRKFHLLDRLLEWLFSRNHKIQDFNDENSNCIIFLLSTRAGGLGINLTVANTCIIYDIDLNPQMDLQAMDRCHIGPMLKSFQQVKA. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01548 150 Pfam Helicase conserved C-terminal domain 80 137 IPR001650 -
Seca1g01548 150 Gene3D - 80 139 IPR027417 -
Seca1g01548 150 SMART helicmild6 69 139 IPR001650 -
Seca1g01548 150 CDD SF2_C_SNF 81 139 - -
Seca1g01548 150 PANTHER SNF2/RAD54 HELICASE FAMILY 81 137 - -
Seca1g01548 150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 137 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01548 Seca-Chr1 24830651 24832627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01548 78 137 RAD5 or RAD16-like Gene Family AT1G05120 40.000 1.10e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01548 K19001 - gmx:100817842 129.413