Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01543 ATGGCTGCAACTTTGGTTGGAGGTGCATTTCTCTCTGCTTCTGTTCAAAACTTAATAGACAAACTAACTTCATCAGAGTTCCGAGATTACATCACAAACAGGAAGCTGAATGTCACACTCTTGAGAGAGTTGGAAACAACACTGCTTACTCTTCAGGCTGTGTTGGATGATGCAGAGGAGAAGAAGATCATCAACCCTGCTGTCAAACAATGGCTAGATGAGCTAAAAGATGCGATTTTTGATGCTGAGGATTTGCTCAGCCAAATAAGTTATGATTCCCTGCGATGCAAGGTGGAGAATACAGAAGCTGAAAACATCACTAATCAGGTGTGGAACTTCCTTTCATCTCCTTTTAACACCTTATATAGAGAGATCAATTCCCAAATGAAGAATATGTGTGAAAGGCTGCAACTTTTTGCACAACATAAAGACATCCTCGGTTTGCAAACTGTAAGTGGGAGAGTTTCTAGGAGAATGCCAACAAGTTCAATAGTAAATCAATCTTCTATGGTTGGTAGGAAGGATGATAAAGAGAAACTAATTAATATGTTGCTATCAAACAATGGTACCAGCAGTAATAATATAGGTGTTGTCACAATTTTAGGCATGGGTGGTGTTGGAAAAACCACACTTGCTCAACTTCTTTACAATGACGAAGAAGTTGAGAAACATTTTGATCTAAAAGCCTGGGCATGTGTGTCAGAGGATTTTGATATTTCCAGACTAACTAAAACTCTTCTTGAATCTGTCACTTCAAGAGCTTGTGAAAGAAATGATCTTGATTTTCTTCGAGTTGAATTAAGGAAAAGCTTGAGTGATAGAAGATTTTTGTTTGTATTGGATGATCTATGGAATGAAAAATATAGTGATTGGGATGAACTAGTAACTCCCTTGCTTAATGGAAAAATGGGAAGCAGAGTGATCATAACAACACGTCAACAAAAAGTTGCAGAGGTCACACACACATTTCCTATTCATAAATTAGAACCTCTGTCAGATGAAGACTGCTGGTTTTTAATCTCAAAGCATGCATTTGGAAGTGAAGACTTTCATGGGAATGAATACAAAAGCCTAGAAGCAATTGGCAAGAAGATTGCAAAAAGGTGTGGGGGATTGCCAATAGCAGCTAGGACGCTTGGAGGACTTCTACGTTCAAAAGTAGATGCAAAGGAGTGGAATGCAATTTTGAACAGCAATATATGGGAGTTACCAAATGATGATATTTTACCTGCATTGCTTTTGAGTTATCAATATCTTCCCTCTCATTTGAAAAGATGTTTTTCCTACTGCTCAATTTTTCCCAAGGATTATCCACTTGATAGGAAACAACTGGTTTTGCTGTGGATGGCAGAGGGTTTCCTTGAACATTCTCAATGCAAAAAAGCAATGGAGGAGGTAGGTGATGACTACTTTGATGAATTGTTATCCAGATCCTTGATTCAGCACTCAACTGATGGTGCTAATGAAGAAAAGTTTGTTATGCATGACCTTGTGAATGATTTAGCTACATTTGTATCTGGAAAAAGTTGTTGTAGGCTTGAATGTGATAAAATCTCTGAAAATGTTCGCCATTTGTCATATAACCAAGAAAGATATGACATTTCCAAGAAGTTTGAGATTTTCTACAAATTCAAATGCTTACGAACCTTCCTACCCATTTCCACACCTTGGAGTGGAGCAAATTTGTCTCTAAAAGTGGTAGATAATTTGCTACCATCACTCAAAATGTTGCGAGTATTATCATTATCATGGTATAGAAACATCACAATGCTACCTGATTCATTTGGCAATTTGGTGCAGTTGCGGTATCTAGACCTCTCCCACACTAAACTCAAAAGCTTGCCTGATACAATATGTAACCTTTTCAATTTGCAGACCTTGCTTTTAGTACAGTGTGAGAGTCTCATTGAATTGCCAACACATGTTGAAAAGTTGGTTAATTTACGTCACCTTGATATTAGTTTCACCTACATAAGGGAGATGCCACTGCAAATTGTTGAATTAGAAAACCTTCAAACTTTAACTGTTTTTGTAGTGGGTAAGGAACAAGGTTTAAGTATCAAAGAGCTTAGGAAGTTCCCTCACCTGCGGGGAAAACTTTCCATCTTTAACCTGTACAATGTCATTGATGTCATGGAGGCGTATGATGTCAACTTGAAGAGTAAAGAAAAAATTGAGGAGTTAAACTTATATTGGGGCAAATTGACTGAAGACTCACAAAAAGAAAAAGGTGTGCTTGATAGGTTGCAACCGACAATAAACCTGAAGAGACTTGCCATCGGGTCCTATGGTGGGACAAGCTTTCCCAGTTGGTTGGGGGATTCTTCATTTTCTAACATGGTGTCCGTTCACATAAGTGGTTGTGAATATTGTGTAACACTTCCACCATTAGGGCGTCTACCTGCTCTCAAGGACCTAAGAATTCGTAGCATGACATTAGAGACAATTGGCCCAGAATTCTACGGGGAAGGTTCCCTTTCTTCATTCCAACCATTTCCATCCCTGGAGTTTTTGGGATTTTGGTGCATGTCAAATTGGAAGGAATGGCTACCCTTTGAAAATGGCAAATTTCCTTTCCCTCGTCTTAAAAAACTGGAGATGCAGAGGTGTCCTGAGTTGAGGGGACATTTGCCAAGCCATCTTTTCTCCATTGAAGAAATTTTAATTTATCATTGTGATCATCTCTTGGCAACACCCCCTACTTTACATTGGCTGTCGACAGTAAAAAAAATTAATATTGGTCAAGATTTTCCTTCTCAAGGGTCTACTGAAAAGTTCCAATGCTCGTTGCTTGAGTGTGATTCTCCATGTCTGCTGCAACATATCGATATGAGGTTCCGTGATAAGCTACTGTCTCTACCAAAAATGATTCTGAGCAGCACTTGTCTTCGGTATTTGAGACTCGATTATATTCCATCTCTCACTGCATTTCCAGCTAATGGTCTACCTACTTCGTTACAGTCACTTATTATTCATGGCTGTGAGAAATTAACATTCCTTTCTCCTGAAACATGGATCAATTACACATCCCTTGAGACTTTGGAGATTATAGATAGCTGTCACTCACTTACATCCTTCCCATTGGATGGTTTCCCTGTGCTCCAACGTCTTTTCATTTGCCGTTGTAGCTGTCTAGAATCCATTTTCATTTCAGAGAGTTCTTCCCTTTTGCCGCTAAGCCTCCAATCACTTATTGTCTATGACTGTAAAGCACTTAGATCACTGCCTCAACAGATAGATACCATGGTGGCTCTTGACTACTTGTCTCTCACAAAGCTTCCAAAACTAGAATGGTCCATTTCTAAGGGCGCTTGCCTGCCTCCCAAATTACGATCATTTGAAATAATCTCACTCAGACTACAGCCTCCAACAGCCATAAATGAGTGGGGTCTCCAAAGCCTGACTGCTCTTTCATATATGCGTATTGGAAGTGATGATATTGTTAACAACTTGCTGAAGGGGAATTTGCTGCCTATTTCTCTTGTGTCTCTGCGTATCAGTGATCTCTCTGAAATGAAATCATTATATGGAAATGGGCTTCAACACCTCTCCTCTCTAGAAAGACTTGAGTTTTACAATTGCCCAAGACTTGAGTCCTTGCCAGATGACAAGTTGCCTTCCTCTCTTAAGATACTGGAGATCAGCCGATGCCCTTTGTTAGAAGGAAAGTATAAAAGTGAGAGCGGAGAACGTTGGTCCAACATTGCTCACATCCCTGTCATTATAATAAATCATGAAGTCACAATATGA 3750 0.3936 MAATLVGGAFLSASVQNLIDKLTSSEFRDYITNRKLNVTLLRELETTLLTLQAVLDDAEEKKIINPAVKQWLDELKDAIFDAEDLLSQISYDSLRCKVENTEAENITNQVWNFLSSPFNTLYREINSQMKNMCERLQLFAQHKDILGLQTVSGRVSRRMPTSSIVNQSSMVGRKDDKEKLINMLLSNNGTSSNNIGVVTILGMGGVGKTTLAQLLYNDEEVEKHFDLKAWACVSEDFDISRLTKTLLESVTSRACERNDLDFLRVELRKSLSDRRFLFVLDDLWNEKYSDWDELVTPLLNGKMGSRVIITTRQQKVAEVTHTFPIHKLEPLSDEDCWFLISKHAFGSEDFHGNEYKSLEAIGKKIAKRCGGLPIAARTLGGLLRSKVDAKEWNAILNSNIWELPNDDILPALLLSYQYLPSHLKRCFSYCSIFPKDYPLDRKQLVLLWMAEGFLEHSQCKKAMEEVGDDYFDELLSRSLIQHSTDGANEEKFVMHDLVNDLATFVSGKSCCRLECDKISENVRHLSYNQERYDISKKFEIFYKFKCLRTFLPISTPWSGANLSLKVVDNLLPSLKMLRVLSLSWYRNITMLPDSFGNLVQLRYLDLSHTKLKSLPDTICNLFNLQTLLLVQCESLIELPTHVEKLVNLRHLDISFTYIREMPLQIVELENLQTLTVFVVGKEQGLSIKELRKFPHLRGKLSIFNLYNVIDVMEAYDVNLKSKEKIEELNLYWGKLTEDSQKEKGVLDRLQPTINLKRLAIGSYGGTSFPSWLGDSSFSNMVSVHISGCEYCVTLPPLGRLPALKDLRIRSMTLETIGPEFYGEGSLSSFQPFPSLEFLGFWCMSNWKEWLPFENGKFPFPRLKKLEMQRCPELRGHLPSHLFSIEEILIYHCDHLLATPPTLHWLSTVKKINIGQDFPSQGSTEKFQCSLLECDSPCLLQHIDMRFRDKLLSLPKMILSSTCLRYLRLDYIPSLTAFPANGLPTSLQSLIIHGCEKLTFLSPETWINYTSLETLEIIDSCHSLTSFPLDGFPVLQRLFICRCSCLESIFISESSSLLPLSLQSLIVYDCKALRSLPQQIDTMVALDYLSLTKLPKLEWSISKGACLPPKLRSFEIISLRLQPPTAINEWGLQSLTALSYMRIGSDDIVNNLLKGNLLPISLVSLRISDLSEMKSLYGNGLQHLSSLERLEFYNCPRLESLPDDKLPSSLKILEISRCPLLEGKYKSESGERWSNIAHIPVIIINHEVTI. 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01543 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 430 IPR027417 -
Seca1g01543 1249 SUPERFAMILY L domain-like 493 914 - -
Seca1g01543 1249 Coils Coil 41 61 - -
Seca1g01543 1249 Gene3D - 330 414 IPR042197 -
Seca1g01543 1249 Gene3D Ribonuclease Inhibitor 1072 1228 IPR032675 -
Seca1g01543 1249 SMART LRR_typ_2 598 621 IPR003591 -
Seca1g01543 1249 SMART LRR_typ_2 645 668 IPR003591 -
Seca1g01543 1249 Gene3D Ribonuclease Inhibitor 925 1070 IPR032675 -
Seca1g01543 1249 Pfam NB-ARC domain 174 397 IPR002182 GO:0043531
Seca1g01543 1249 SUPERFAMILY L domain-like 934 1233 - -
Seca1g01543 1249 PANTHER DISEASE RESISTANCE PROTEIN RP 41 870 IPR044974 GO:0006952
Seca1g01543 1249 Gene3D - 415 503 IPR036388 -
Seca1g01543 1249 Gene3D - 14 137 - -
Seca1g01543 1249 FunFam Probable disease resistance protein At1g61300 154 322 - -
Seca1g01543 1249 Gene3D Ribonuclease Inhibitor 534 924 IPR032675 -
Seca1g01543 1249 PRINTS Disease resistance protein signature 270 284 - -
Seca1g01543 1249 PRINTS Disease resistance protein signature 596 612 - -
Seca1g01543 1249 PRINTS Disease resistance protein signature 197 212 - -
Seca1g01543 1249 PRINTS Disease resistance protein signature 369 383 - -
Seca1g01543 1249 Gene3D - 152 323 IPR027417 -
Seca1g01543 1249 Pfam Rx N-terminal domain 10 100 IPR041118 -
Seca1g01543 1249 FunFam Probable disease resistance protein At1g63360 416 504 - -
Seca1g01543 1249 ProSiteProfiles Leucine-rich repeat profile. 600 621 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01543 Seca-Chr1 24747771 24751520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01543 588 674 WRKY Transcription Factor Family AT4G12020 42.045 1.74e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01543 - - cam:101493845 1533.85