Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01539 ATGGCGGAGTCGCATTCCTCCGCTCCGACCACTCCTCCTCCTCCCTCCGCTAACCGTGAAGCTTCGCCGTCGGAGGAAAATGCAGCGAACGGCTCTCAAACTTGGTTGCGGTCACCGGAGTCTCGCCGTGTGAGCATCACCTTTGGAAGAACCAGCTGGAGTTACGGAGATGAATCAGCCATTGTTAGGGACGATACCTGGTCCTGCATCGCCGTCGTATTCAGCTTTTGGTTCTTCGTGTCGGTGACTTTGATACTGGGGGTTTATGGCTCGATGTTCATCATGCTTGGTCCTGAATCTTCAATTGTTTTGCAACCTAGCCCTGTTTTCGTGCAATATGTGAAGGTAGAAAACTTAGACGAAAAGCCAGGACCCATTCTTTATGGCACATATCAATATCCACCTCTTGATGTTGTTACCACTTGGGAAGAAACTCGTAATGTATCTCTTCCCTCTGGCTTACATAAGGCAAGTATATGTGAATGGAAATATTATCTGAACAGAGGATCTGAAGTAAATATCTCGTATAGCTTGAGCTCTGAGAGCTCCTCCATTTTCCTGGTAATTGCAGAAGGGGCTGAAAGCCTCTCTCTGTGGCTGGAGGACCCAACATATCCTAATACAACTCTGTCTTGGAACATGATCCATGGAACTGGTATGATTACACAGGAAATATTCTTCTCGTCCAGCTATTATGTAGCAGTGGGTAATTTGGATGAGGAAGTGGAGGTGGACTTAAACATCAGTGTAAGGGCCTTCTTGCACAATACAACGAATGCTTACTACAAATGTTCTCTAACTAGTAGTCCATGCAGTTTGAGTATTTTCTTTCCTGATGGAAATGCAGCTGTCTTAGTTTCTCCCGGTCCACAACAGGCAAGATTGTTATTGTATACTTGCTTCATAGAAATAAACACATCCAATGATGAATGGTATGTCAAAGTGTCCTATGGACCAAGATGGGTGACATATATTTTTGGCATAGGTGGAATGACTTTGCTTATGTTTTGGGCCTTCAAATTCTTGAACAAACTCCAGCGTGGCCGTGAAGATAGAGCGGAAGATGGACATGATGGAACAGCATCTCAGAGAGCCCCTTTACTTTCTCGCAAAGAAGATGATCTATCAAGTTGGGGTTCATCATATGATTCCTTACCAGAGGATGAAGAGGATCTTGACCTTCTAGCAGGAGGTTCCATTGATGGGAAGTTATCAGGTGATGGAGAAACCAGTAATAATACCCGGCGTCTCTGTGCAATTTGCTTTGATGCTCCACGGGACTGCTTCTTTCTTCCATGCGGGCACTGTGCAGCTTGTTTTGCATGTGGAACTACGATAGCAGAGGCAGCTGGTACATGCCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAGATTTTTACTGTCTGA 1410 0.4525 MAESHSSAPTTPPPPSANREASPSEENAANGSQTWLRSPESRRVSITFGRTSWSYGDESAIVRDDTWSCIAVVFSFWFFVSVTLILGVYGSMFIMLGPESSIVLQPSPVFVQYVKVENLDEKPGPILYGTYQYPPLDVVTTWEETRNVSLPSGLHKASICEWKYYLNRGSEVNISYSLSSESSSIFLVIAEGAESLSLWLEDPTYPNTTLSWNMIHGTGMITQEIFFSSSYYVAVGNLDEEVEVDLNISVRAFLHNTTNAYYKCSLTSSPCSLSIFFPDGNAAVLVSPGPQQARLLLYTCFIEINTSNDEWYVKVSYGPRWVTYIFGIGGMTLLMFWAFKFLNKLQRGREDRAEDGHDGTASQRAPLLSRKEDDLSSWGSSYDSLPEDEEDLDLLAGGSIDGKLSGDGETSNNTRRLCAICFDAPRDCFFLPCGHCAACFACGTTIAEAAGTCPVCRRNMKKVRKIFTV. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01539 469 SUPERFAMILY RING/U-box 417 463 - -
Seca1g01539 469 FunFam E3 ubiquitin-protein ligase APD2 407 468 - -
Seca1g01539 469 MobiDBLite consensus disorder prediction 1 38 - -
Seca1g01539 469 MobiDBLite consensus disorder prediction 20 38 - -
Seca1g01539 469 MobiDBLite consensus disorder prediction 352 386 - -
Seca1g01539 469 ProSiteProfiles Zinc finger RING-type profile. 418 457 IPR001841 -
Seca1g01539 469 SMART ring_2 418 456 IPR001841 -
Seca1g01539 469 Pfam Domain of unknown function (DUF4793) 220 337 IPR032010 -
Seca1g01539 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 469 IPR013083 -
Seca1g01539 469 Pfam Domain of unknown function (DUF4792) 124 196 IPR032008 -
Seca1g01539 469 Pfam Zinc finger, C3HC4 type (RING finger) 415 463 - -
Seca1g01539 469 PANTHER OS05G0521000 PROTEIN 56 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01539 Seca-Chr1 24619230 24628176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01539 391 466 C3H Transcription Factor Family AT3G06140 30.263 1.09e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01539 - - tpra:123891971 611.683