Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01536 ATGGGTTCCACTCGCTCAGATGGCTCTGCTACTGGCAAAGAACGCCTACGCTGGACACAAGAACTCCATGACCGGTTTGTGGAGGCTGTAAATAGGCTTGGGGGTCCTGATAGGGCAACACCAAAAGGTATATTGAAGGGAATGAAGGCTATGGGTGTTTCAGAATTAAACATTTATCACGTTAAAAGCCACTTGCAGAAATACAGGCTTTCAAAATTGATTCCAGAGTCCACCACAAGAGGAAAGCTTGAGAAGAGAAACATATCAGATATACTACCAAATTTTAGTTCTATATCCGCTCTTCAGCTAAAGGAAGTTCTTCAAATGCAGACAGAGGTGCATAAACGCTTGAATGATAAAGTAGAGAAGGTTCAAAGGAGCTTGAAGCTAAAAATTGAAGCACAAGGAAAGTACCTGGAGAGAATTAGTCAAAGTTATCATAGCAAAACAATTATTGGAAAAGCTTGCAACAAGCCTTTTGTTGCAGCTAAACTTCTACCTTCTCTTTCTGAGGAATCTGAATCATTGGAAACACAGCCTGAGGAAGAGCATAGATCAACTAAAAAACAGAGGGTTGCAGAGGAGGGTGTTTTTCCAACAAGTTTTGAACTAGGATCATCCACCACCCCAGAATTCTACAACCAAACCTGGAATCTTTCTTGGAATCAGATTGCTGCAGCATCATGCAATTCACCTTTGGTGCCCGGTTTCTTATTATAA 720 0.4125 MGSTRSDGSATGKERLRWTQELHDRFVEAVNRLGGPDRATPKGILKGMKAMGVSELNIYHVKSHLQKYRLSKLIPESTTRGKLEKRNISDILPNFSSISALQLKEVLQMQTEVHKRLNDKVEKVQRSLKLKIEAQGKYLERISQSYHSKTIIGKACNKPFVAAKLLPSLSEESESLETQPEEEHRSTKKQRVAEEGVFPTSFELGSSTTPEFYNQTWNLSWNQIAAASCNSPLVPGFLL. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01536 239 Pfam MYB-CC type transfactor, LHEQLE motif 102 142 IPR025756 -
Seca1g01536 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
Seca1g01536 239 MobiDBLite consensus disorder prediction 178 192 - -
Seca1g01536 239 NCBIfam myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Seca1g01536 239 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Seca1g01536 239 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 184 IPR044848 GO:0003700
Seca1g01536 239 Gene3D - 12 73 - -
Seca1g01536 239 MobiDBLite consensus disorder prediction 171 192 - -
Seca1g01536 239 FunFam Two-component response regulator 9 73 - -
Seca1g01536 239 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01536 Seca-Chr1 24520739 24525684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01536 9 185 G2-like Transcription Factor Family AT4G28610 44.324 1.21e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca1g01536 Myb_DNA-binding 5.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01536 - - psat:127127459 316.235