Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01533 ATGGCTCCTGAGGTGCTCAAGAGGAACTATGGACCTGAGATAGATATATGGAGCGCGGGTGTAATTCTCTATATCTTACTGTGCGGCGTTCCCCCATTTTGGGCTGAATCTGAGCAAGGAGTTGCACAGGCCATTCTTCGAGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGTATTTCTGAAGGTGCTAAAAGTCTTGTTAGGCAAATGTTAGAACCAGACCCTAAGCTCAGATTAACTGCCAAACAAGTGCTTGAGCATCCCTGGCTCCAAAATGCTAAGAAAGCTCCTAATGTTCCTCTTGGAGATGTTGTCAAGTCAAGGCTCAAGCAATTTTCAGTGATGAATAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGACATGTTCAAGAAGATGGATAATGATAATGATGGTATTGTTTCCATCGAAGAACTAAAAGCTGGATTTCAGAACTCTGGGTCCCAACTTGCTGAGTCTGAAGTTCAGATGCTTATTGAAGCTGTAGATAGTAATGGTAAGGGAACACTAGACTATGGAGAATTTGTTGCCGTTTCCCTTCACTTAAAAAGGATGGCTAATGATGAGCATCTTCGCAAGGCCTTCTCCTATTTTGACAAGGATGGGAATGGATATATTGAACCAGATGAGCTACGGAATGCCTTGATGGAAGATGGAGCAGATGACTGTACAGATGTAGCAAATGACATTTTCCAAGAAGTGGACACAGACAAGGATGGGCGAATCAGCTATGATGAATTTGTGGCTATGATGAAAACTGGAACGGATTGGAGAAAAGCATCTAGGCATTACTCACGTGGGAGATTCAATAGCTTGAGCTTAAAGTTGATGAAAGATGGTTCTTTAAACTTAGGAAATGAGTAG 924 0.4199 MAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISEGAKSLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSVMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDNDNDGIVSIEELKAGFQNSGSQLAESEVQMLIEAVDSNGKGTLDYGEFVAVSLHLKRMANDEHLRKAFSYFDKDGNGYIEPDELRNALMEDGADDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01533 307 Pfam EF-hand domain pair 209 272 IPR002048 GO:0005509
Seca1g01533 307 Pfam EF-hand domain pair 137 197 IPR002048 GO:0005509
Seca1g01533 307 ProSiteProfiles EF-hand calcium-binding domain profile. 206 241 IPR002048 GO:0005509
Seca1g01533 307 ProSiteProfiles EF-hand calcium-binding domain profile. 170 205 IPR002048 GO:0005509
Seca1g01533 307 ProSiteProfiles EF-hand calcium-binding domain profile. 242 277 IPR002048 GO:0005509
Seca1g01533 307 SMART efh_1 138 166 IPR002048 GO:0005509
Seca1g01533 307 SMART efh_1 246 274 IPR002048 GO:0005509
Seca1g01533 307 SMART efh_1 210 238 IPR002048 GO:0005509
Seca1g01533 307 SMART efh_1 174 202 IPR002048 GO:0005509
Seca1g01533 307 ProSitePatterns EF-hand calcium-binding domain. 147 159 IPR018247 -
Seca1g01533 307 ProSitePatterns EF-hand calcium-binding domain. 255 267 IPR018247 -
Seca1g01533 307 SUPERFAMILY Protein kinase-like (PK-like) 1 116 IPR011009 -
Seca1g01533 307 SUPERFAMILY EF-hand 120 298 IPR011992 -
Seca1g01533 307 SMART serkin_6 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01533 307 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 267 - -
Seca1g01533 307 Pfam Protein kinase domain 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01533 307 FunFam Calcium-dependent protein kinase 7 36 98 - -
Seca1g01533 307 ProSiteProfiles Protein kinase domain profile. 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01533 307 ProSitePatterns EF-hand calcium-binding domain. 219 231 IPR018247 -
Seca1g01533 307 Gene3D - 99 275 - -
Seca1g01533 307 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Seca1g01533 307 FunFam Calcium-dependent protein kinase 7 100 275 - -
Seca1g01533 307 ProSiteProfiles EF-hand calcium-binding domain profile. 134 169 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01533 Seca-Chr1 24193962 24196907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01533 1 304 EF-hand Containing Proteins AT1G74740 70.724 7.11e-161 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca1g01533 Pkinase 5.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01533 K13412 - gmx:100793170 590.497