Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01531 ATGGGCAATTGCTGCAGATCTCCGGCTGCCGTGGCCCGCGAGGACGTCAAATCGAGCTTCTCCGCCCACGATCACGGTAAGCGTGGCGGAGACGGCACTGGCGGGAACAACAAGAAGGCTCCGGCGCCGGTCACGGTGCTCGGCGGCGCGGCGAAGGAGAACATGGAGGAGCGGTACTTGGTGGACCGTGAACTCGGTCGAGGTGAGTTCGGTGTGACGTACCTTTGCATTGATCGTGATACGAGGGAGCTTCTGGCGTGCAAGAGCATCTCGAAGAGGAAGCTGAGGACCGCCGTTGACGTGGAAGACGTGCGCCGCGAGGTTGCTATCATGCGCCACCTGCCTAAGAGTCCTTCTATTGTGGCGCTTCGAGAGGCCTGTGAGGACGACAATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGCATCGTCGCTCGCGGCCACTACACGGAACGTGCTGCTGCCGCCGTCGCGAGAACAATTGTCGAGGTCGTGCAGCTCTGCCACAAGCATGGGGTTATTCACCGCGACCTCAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCGCCTCTCAAGGCAATTGATTTTGGACTCTCCATATTCTTCAAGCCAGGTACGGACTTGAATCTGAGGCCACCGAACGGTTTTGATGTAGCGTTGGACTGTTAG 696 0.5833 MGNCCRSPAAVAREDVKSSFSAHDHGKRGGDGTGGNNKKAPAPVTVLGGAAKENMEERYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPKSPSIVALREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVARTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGTDLNLRPPNGFDVALDC. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01531 231 Gene3D Transferase(Phosphotransferase) domain 1 145 223 - -
Seca1g01531 231 ProSiteProfiles Protein kinase domain profile. 59 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01531 231 SMART serkin_6 59 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01531 231 Pfam Protein kinase domain 61 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01531 231 SUPERFAMILY Protein kinase-like (PK-like) 57 215 IPR011009 -
Seca1g01531 231 MobiDBLite consensus disorder prediction 17 32 - -
Seca1g01531 231 FunFam Calcium-dependent protein kinase 1 61 144 - -
Seca1g01531 231 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 213 - -
Seca1g01531 231 Gene3D Phosphorylase Kinase; domain 1 60 144 - -
Seca1g01531 231 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Seca1g01531 231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Seca1g01531 231 MobiDBLite consensus disorder prediction 15 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01531 Seca-Chr1 24188924 24189619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01531 1 218 EF-hand Containing Proteins AT3G51850 81.193 1.80e-128 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca1g01531 Pkinase 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01531 K13412 - lja:Lj0g3v0236569.1 386.726