Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g01531 | ATGGGCAATTGCTGCAGATCTCCGGCTGCCGTGGCCCGCGAGGACGTCAAATCGAGCTTCTCCGCCCACGATCACGGTAAGCGTGGCGGAGACGGCACTGGCGGGAACAACAAGAAGGCTCCGGCGCCGGTCACGGTGCTCGGCGGCGCGGCGAAGGAGAACATGGAGGAGCGGTACTTGGTGGACCGTGAACTCGGTCGAGGTGAGTTCGGTGTGACGTACCTTTGCATTGATCGTGATACGAGGGAGCTTCTGGCGTGCAAGAGCATCTCGAAGAGGAAGCTGAGGACCGCCGTTGACGTGGAAGACGTGCGCCGCGAGGTTGCTATCATGCGCCACCTGCCTAAGAGTCCTTCTATTGTGGCGCTTCGAGAGGCCTGTGAGGACGACAATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGCATCGTCGCTCGCGGCCACTACACGGAACGTGCTGCTGCCGCCGTCGCGAGAACAATTGTCGAGGTCGTGCAGCTCTGCCACAAGCATGGGGTTATTCACCGCGACCTCAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCGCCTCTCAAGGCAATTGATTTTGGACTCTCCATATTCTTCAAGCCAGGTACGGACTTGAATCTGAGGCCACCGAACGGTTTTGATGTAGCGTTGGACTGTTAG | 696 | 0.5833 | MGNCCRSPAAVAREDVKSSFSAHDHGKRGGDGTGGNNKKAPAPVTVLGGAAKENMEERYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPKSPSIVALREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVARTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGTDLNLRPPNGFDVALDC. | 232 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g01531 | 231 | Gene3D | Transferase(Phosphotransferase) domain 1 | 145 | 223 | - | - | |
Seca1g01531 | 231 | ProSiteProfiles | Protein kinase domain profile. | 59 | 231 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g01531 | 231 | SMART | serkin_6 | 59 | 229 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g01531 | 231 | Pfam | Protein kinase domain | 61 | 216 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g01531 | 231 | SUPERFAMILY | Protein kinase-like (PK-like) | 57 | 215 | IPR011009 | - | |
Seca1g01531 | 231 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
Seca1g01531 | 231 | FunFam | Calcium-dependent protein kinase 1 | 61 | 144 | - | - | |
Seca1g01531 | 231 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 52 | 213 | - | - | |
Seca1g01531 | 231 | Gene3D | Phosphorylase Kinase; domain 1 | 60 | 144 | - | - | |
Seca1g01531 | 231 | ProSitePatterns | Protein kinases ATP-binding region signature. | 65 | 88 | IPR017441 | GO:0005524 | |
Seca1g01531 | 231 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 179 | 191 | IPR008271 | GO:0004672|GO:0006468 | |
Seca1g01531 | 231 | MobiDBLite | consensus disorder prediction | 15 | 43 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g01531 | Seca-Chr1 | 24188924 | 24189619 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g01531 | 1 | 218 | EF-hand Containing Proteins | AT3G51850 | 81.193 | 1.80e-128 | 367 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CAMK_CDPK | Seca1g01531 | Pkinase | 2.2e-41 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g01531 | K13412 | - | lja:Lj0g3v0236569.1 | 386.726 |