Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01529 ATGGAGGGTCATCATCTCCATCACCATCAACGGCAACAACAACAACATCATCATCAACAACAACACCATCCTCCTCCTCATAACATCATCACTAACGTGGATGCTTCAGATAGATTCCCTCAATGGAGCATCCAAGAAACAAAAGAGTTTCTCATGATCCGAGCAGAGTTAGATCAAACTTTCATGGAAACCAAAAGGAACAAACAGCTTTGGGAAGTTATCTCCAATAAGATGAAGGAAAAGGGTTATCATAGAAGTGCAGAGCAGTGTAAGTGCAAGTGGAAAAACCTCGTTACTCGCTATAAGGGATGTGAAACGATGGAGCCAGAAGGGGTGAGGCAGCAATTTCCATTTTACAATGAACTTCAAGCGATTTTCACTTCAAGGATGCAGAGAATGTTGTGGGCTGAAGCTGAAGGAGGGTCTAAAAAGAAAGCGGTGCACCTTTCTTCTGAGGATGAAGATGATGGGAATGAAGAGAGTGAAGGAGATCACAACAAGGGTGGTAGTGGTAGTAGTAGGAAGAAGAAGAAGGGTAAGATGGTTAGTGGAGGTAGTAGTAGTGGGGGTGGTAATAGCAATTTGAAGGAGATTCTAGAGGAGTTTATGAGGCAACAAATGCAAATGGAAGCTCAATGGATGGAAGCATATGAGGCAAGGGAGAGTGAGAGGAGGTTGAAGGAGATGGAATGGAGACAAACTATGGAAGCATTAGAGAATGAGAGGATAATGATGGACCAAAGATGGAGAGAAAGGGAAGAACAAAGAAGGATTAGAGAAGAAGCTAGGGCTGATAAGAGAGATGCTCTAATCACAGCTTTGCTTAACAAGCTAAGAAGAGAAGAGATGTAG 852 0.4284 MEGHHLHHHQRQQQQHHHQQQHHPPPHNIITNVDASDRFPQWSIQETKEFLMIRAELDQTFMETKRNKQLWEVISNKMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEPEGVRQQFPFYNELQAIFTSRMQRMLWAEAEGGSKKKAVHLSSEDEDDGNEESEGDHNKGGSGSSRKKKKGKMVSGGSSSGGGNSNLKEILEEFMRQQMQMEAQWMEAYEARESERRLKEMEWRQTMEALENERIMMDQRWREREEQRRIREEARADKRDALITALLNKLRREEM. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01529 283 CDD GT1 40 105 - -
Seca1g01529 283 MobiDBLite consensus disorder prediction 9 23 - -
Seca1g01529 283 MobiDBLite consensus disorder prediction 1 33 - -
Seca1g01529 283 Coils Coil 192 212 - -
Seca1g01529 283 ProSiteProfiles Myb-like domain profile. 42 98 IPR001005 -
Seca1g01529 283 Pfam Myb/SANT-like DNA-binding domain 41 125 IPR044822 -
Seca1g01529 283 Gene3D - 42 103 - -
Seca1g01529 283 PANTHER FI21293P1 12 279 - -
Seca1g01529 283 FunFam Zinc finger and SCAN domain-containing 20 42 103 - -
Seca1g01529 283 MobiDBLite consensus disorder prediction 141 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01529 Seca-Chr1 24005009 24006577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01529 37 281 Trihelix Transcription Factor Family AT5G01380 55.056 1.67e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca1g01529 Myb_DNA-bind_4 9.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01529 - - gmx:100778195 378.637