Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01497 ATGGAGTGCATTAACCTTACCTCTTCTTCTGCAGGCTCATCATCATCATCTTCCAAGGCAAACAACAAGAGCAAGGAGAAAAAGGGTGGTGTGAAGAAAACCAAGGGAGTAGTGAAGCTTTCAACTGACCCTCAAAGTGTTGCAGCAAGAGAAAGAAGGCATAGAATCAGTGACAGGTTCAAGATCCTTCAGAGTATGGTCCCTGGTGGGAGTAAGATGGATACAGTTTCTATGTTGGAGGAAGCCATTCACTATGTCAAGTTCCTCAAGACTCAGATTTGGCTTCACCAAACAATGATAAACTCTGTGGATGATGATCAGTACTCACCAATGTTCCTTCCTTCAGAGTGTTTTCCTAATGAACAAACTATTTCCCTTCAGCAAAACCCTTCATCAGTAGATTCTCTGCAGAGTTTACCACAGCTACCAGTACTAGATCAGTTCTGCTTCCAAGGTAGTGAAGAATATGCCAATAACTTTGATGATGCCACTATGAAATATTGGCCAGCTTAA 513 0.4211 MECINLTSSSAGSSSSSSKANNKSKEKKGGVKKTKGVVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQTMINSVDDDQYSPMFLPSECFPNEQTISLQQNPSSVDSLQSLPQLPVLDQFCFQGSEEYANNFDDATMKYWPA. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01497 170 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 100 IPR036638 GO:0046983
Seca1g01497 170 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Seca1g01497 170 FunFam Transcription factor LAX PANICLE 43 106 - -
Seca1g01497 170 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g01497 170 CDD bHLH_AtIND_like 41 100 - -
Seca1g01497 170 SMART finulus 46 95 IPR011598 GO:0046983
Seca1g01497 170 MobiDBLite consensus disorder prediction 1 48 - -
Seca1g01497 170 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 23 148 IPR045843 GO:0003700|GO:0006355
Seca1g01497 170 Gene3D - 45 98 IPR036638 GO:0046983
Seca1g01497 170 Pfam Helix-loop-helix DNA-binding domain 50 89 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01497 Seca-Chr1 23239811 23240323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01497 38 115 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.837 2.11e-22 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g01497 HLH 5.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01497 - - gmx:113001230 171.4