Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01491 ATGAAGGTGGAAGAAAGAGAAGATGGGTCGGAATGTTCCAAGACAAGTCCTAATTGTAATGAAGAAGAAGAAGATGGTAATTGTAGTGAGGAGGAGGCCAATAATGAATTATTAGAAGATGAAAGGTGTAAGCAAAACAATGGAGGAAGTTCAAGCAATAGCACTGTGGAAGAGAATAATGAGAAGAAGACATCAGTTAGGCCTTATGTTAGATCCAAGTTGCCAAGGCTTCGTTGGACTCCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCTACCCCAAAGTTGGTTCTTCAGTTGATGAATATAAAAGGCTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGATAGTTGACACAAATCAAGTATTGGCTGATCATAGGCTTCTTATAGAAAGTGGAGACAGAAATGTTTATAATCTCAGCCAACTTCCCATGCTTCAAGGCTATAATCCAACCCAAACTTCAGCATATAGATTTGGATATGGGGATGCTTCTCTTGCTATGTATGAAAACATGGTGCATAGGCCTTTCATGGGTAGGAGTTCAATAGATGATTCTGGAGCTGAATTTTATGGCAGGAATATTCATGGGACTAATAGCAACATCAATTGGAGTAATAGTAGTATTTTCCAAGTGGATTCTTCCAATTTTAGTGAACTATCAAAAAGCAAAGTCCATGAATCAACAAAAGATAAATTCCTCTCATTTGGTGGCCATGAATCTCTATGCACACAAATCAAATTGAGTACTCAAATTAATGTTCTTCATCCATCAACACAAGTAGTGGAGCCAAATGTACAAGAGCTCATGGCTAATCAAGAGGAATTGAGAAAAAGGAAGGCTTCAGATATTGACCTTGATTTGGATCTTTCACTTAAATTAAATTCAAGGATGAGTAATGCTGAGATTAACCAAGGAAGCATAGAGGACCATGAAGTTGATAGCAATCTATCACTCTCTTTGTATTCTCAATCTTCTAAAGAAGCACAACATGATCATTCTACTAAGGAGCAAAGGATCAAAAGAGCCAATGCTTTGGATCTGACTATATGA 1098 0.377 MKVEEREDGSECSKTSPNCNEEEEDGNCSEEEANNELLEDERCKQNNGGSSSNSTVEENNEKKTSVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKIVDTNQVLADHRLLIESGDRNVYNLSQLPMLQGYNPTQTSAYRFGYGDASLAMYENMVHRPFMGRSSIDDSGAEFYGRNIHGTNSNINWSNSSIFQVDSSNFSELSKSKVHESTKDKFLSFGGHESLCTQIKLSTQINVLHPSTQVVEPNVQELMANQEELRKRKASDIDLDLDLSLKLNSRMSNAEINQGSIEDHEVDSNLSLSLYSQSSKEAQHDHSTKEQRIKRANALDLTI. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01491 365 MobiDBLite consensus disorder prediction 1 69 - -
Seca1g01491 365 FunFam Myb family transcription factor 73 131 - -
Seca1g01491 365 Coils Coil 21 41 - -
Seca1g01491 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 54 256 IPR046955 GO:0003700
Seca1g01491 365 MobiDBLite consensus disorder prediction 44 59 - -
Seca1g01491 365 MobiDBLite consensus disorder prediction 344 358 - -
Seca1g01491 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 130 IPR006447 GO:0003677
Seca1g01491 365 MobiDBLite consensus disorder prediction 1 21 - -
Seca1g01491 365 Pfam Myb-like DNA-binding domain 77 127 IPR001005 -
Seca1g01491 365 MobiDBLite consensus disorder prediction 338 365 - -
Seca1g01491 365 Gene3D - 74 131 - -
Seca1g01491 365 SUPERFAMILY Homeodomain-like 74 129 IPR009057 -
Seca1g01491 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 131 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01491 Seca-Chr1 23141794 23144196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01491 55 159 G2-like Transcription Factor Family AT2G42660 51.538 9.74e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca1g01491 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01491 - - gmx:102662997 408.683