Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01487 ATGGCTTCACAAACTCTTCTTATCTTCCTCCTCTTACTCCCTCTCCTACACCAAGTTGCTGCCAAGTCTTTTGTCTTTGAAGGATTCAATAACAAAAGTGAACTCACCCTTTATGGTGCTTCCATTATCAAAACCAGTGCTTTACTTAAGCTCACAAACAGATCAACCAATATTATAGGCCATGCATTCTATTCCATACCTTTCCAAATGCCCCCACCAAATGCTTATTCCTTTAGTACCTCCTTTGTTTTCTCAATTGTATCACCAAGTTCTGGCTCTGGTGGCTTTGGCCTTGCCTTCACCATAGCACCTTCAACACAATTTCCTGGAGCTGAGGCAGGGCATTATCTTGGTCTTCTTAACCCCAACAATGATGGGGATTCCTCAAATCACATATTTGCAGTTGAATTTGATACTGTAAATGGTTACAAAGGTGATTCTGACTCTGAAGGAAACCATGTTGGTGTCAACATAAACAGCATGTCCTCAAGAATTACTGAACCAGCTGCATATATTCAAGAAGGAACAGATAGTGTGAAGGAAGATTTCAGAATGGCAAGGGTTGATGCTGTCCAAGCTTGGATAGAATATGATGGTAAAAAGAAAACTGTGAATGTAACAGTAGCCCCTTTGCCATTACAAAGACCAAGAAAACCACTTATACTTAATTATCCCATTGATCTTAACACTGTTATGAAGGAAAACATGTATGTTGGTTTCTCAGCTTCAACAGGTAGCAAGGAAACAAGCTCCCATTATATCTTGGGATGGAGTTTTGCAGTAAATGGAGCTGCCCCTTCACTAAATATTTCTAAGCTTCCAATTCCACCACCAAAGGAGCAAGAACCATCTTCCTTTCCTTGGTTCAAGGTTGCAATTGGCATTTTATCTGCTTTGACCTTCACCTTGTTGTGTCTCTTATTTTTTCTGTCATTTTATAAGAGATACATGGATTTTGAGGCTCTTGAGGACTGGGAAATGGATTGTCCTCACAGATTTAGATACAAAGATCTTCACATAGCAACAAAAGGGTTCAAAGAGAGCCAACTAATTGGTGTTGGAGGCTTTGGTGCTGTATATAAAGGTGTGTTACCAACTACAGGAACTGAGGTTGCTGTTAAGAGGATTGTTCGCAGCCCTTTCCATGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGGTTAAGGCACAAGAATTTGGTGAATCTTCAAGGGTGGTGTAAGAAAAAGAATGATCTACTCCTAGTCTATGATTTCATTCCAAATGGAAGCCTTGATTCTATCCTATTTAACCATAATGCAAATTTTGTTTTGGATTGGGACCAAAGATTCAGAATCCTCAAAGGCATCACTGCAGGGCTATTGTATCTGCATGAAGAGTGGGAACAAGTTGTGATCCATAGAGATGTGAAAACTAGCAATATTCTAATAGATGGGGACTTGAATGCTCGTTTAGGTGACTTTGGACTAGCAAGGCTCTATGATCATGGTCAAGTATCACACACAACTAGTGTTGTTGGCACAATTGGGTATATTGCACCAGAGTTAACTCGCACAGGAAAGGCATCAACCAGATCAGATGTGTATGCATATGGGGTTTTACTCCTTGAAATGGTTACTGGGAAGAGACCTATTGGTATTGGATCATCAGATCAGTTTTTTTTGGTGGAATGGGTTATTGAAAGTTACCAATTGGGTCAAATTCTTGAGGTAATTGATCCTAAGCTGAATTCAGTCTATGATGAGGAAGAAGTGGAGTTGGTTCTGAAGTTGGGTCTCCTCTGCACTCAACACAGAGCAGATTATAGACCAACCATGAAACAAGTTACAAGGTACCTAAACTTTGATGACCCTCTTCCTGATATTGCTGATTGGAGAAGGAGTGTTTCTGAGAGCAGCACATTGAGCTCAGGTTTCTTAGCAGCAACTTCTATGAGTACTATTGCAACATCAAACAATTTATCTTCCATAGGCATGAGTACAGTGTCCATAGATGCTGGTAGATAG 2013 0.4024 MASQTLLIFLLLLPLLHQVAAKSFVFEGFNNKSELTLYGASIIKTSALLKLTNRSTNIIGHAFYSIPFQMPPPNAYSFSTSFVFSIVSPSSGSGGFGLAFTIAPSTQFPGAEAGHYLGLLNPNNDGDSSNHIFAVEFDTVNGYKGDSDSEGNHVGVNINSMSSRITEPAAYIQEGTDSVKEDFRMARVDAVQAWIEYDGKKKTVNVTVAPLPLQRPRKPLILNYPIDLNTVMKENMYVGFSASTGSKETSSHYILGWSFAVNGAAPSLNISKLPIPPPKEQEPSSFPWFKVAIGILSALTFTLLCLLFFLSFYKRYMDFEALEDWEMDCPHRFRYKDLHIATKGFKESQLIGVGGFGAVYKGVLPTTGTEVAVKRIVRSPFHGMREFAAEIESLGRLRHKNLVNLQGWCKKKNDLLLVYDFIPNGSLDSILFNHNANFVLDWDQRFRILKGITAGLLYLHEEWEQVVIHRDVKTSNILIDGDLNARLGDFGLARLYDHGQVSHTTSVVGTIGYIAPELTRTGKASTRSDVYAYGVLLLEMVTGKRPIGIGSSDQFFLVEWVIESYQLGQILEVIDPKLNSVYDEEEVELVLKLGLLCTQHRADYRPTMKQVTRYLNFDDPLPDIADWRRSVSESSTLSSGFLAATSMSTIATSNNLSSIGMSTVSIDAGR. 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01487 670 CDD lectin_legume_LecRK_Arcelin_ConA 23 263 IPR001220 GO:0030246
Seca1g01487 670 SUPERFAMILY Protein kinase-like (PK-like) 328 623 IPR011009 -
Seca1g01487 670 ProSitePatterns Protein kinases ATP-binding region signature. 351 374 IPR017441 GO:0005524
Seca1g01487 670 Pfam Legume lectin domain 22 273 IPR001220 GO:0030246
Seca1g01487 670 CDD STKc_IRAK 351 616 - -
Seca1g01487 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 279 IPR013320 -
Seca1g01487 670 FunFam Lectin-domain containing receptor kinase VI.3 330 421 - -
Seca1g01487 670 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Seca1g01487 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Seca1g01487 670 SMART serkin_6 345 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01487 670 Gene3D Transferase(Phosphotransferase) domain 1 422 628 - -
Seca1g01487 670 ProSiteProfiles Protein kinase domain profile. 345 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01487 670 PANTHER - 40 617 - -
Seca1g01487 670 FunFam L-type lectin-domain containing receptor kinase V.9 20 267 - -
Seca1g01487 670 Pfam Protein kinase domain 345 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01487 670 FunFam L-type lectin-domain containing receptor kinase S.4 422 627 - -
Seca1g01487 670 Gene3D - 20 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01487 Seca-Chr1 23025469 23027502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01487 24 670 Receptor kinase-like Gene Family AT5G01560 49.550 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca1g01487 Pkinase 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01487 - - gmx:100802724 1031.17