Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01484 ATGGACTCAATTTTTCATCAAGTTGTTGAGCCCTATAACTTTACCATGGTTGACCATGTTGGTGACTGTGGACCCTATGGCATCATCATAGATAACCAAGTTGGTGATTATGAATTCAGTACTCTGTTGAGCACTTCAGAGGGTACTCCTTCTGAAACCTGCTCCACCCCTTTTCCTGCCATCATAAACCCCAATGATCATATCCAATACCCAATTGATGAAGAAATCCTGCAACTCCCATCTCTGATGGAATTTGATGGTTTTGATTCCATCCTGAGTGCCCATATGGTTGGTATTCATGGCCATGGAGACCCACAAGAAAGTGAAGGAAGCTTCCCTTCACAGAATTTACCCAGTGAGGTAGGAGATGCATGGAGTCCTACTCTATCAGAGAAGTCAGAGTTGTCCTCAATTCAACCATCACTGACTTTGCCACAAGAAAACATGGAAATTGACAACCAAGTGAGCCTTCTACATCTGATAGAGGCTTTTGCAGAGGCCTTGGAGCAAGGACAGAAAGCACTAGCAAGTGTGATCTTGAGGTGCATAAATCAGAAAGTTAGCCTACTTGGTGAATCTCTTGAGCGCTTTGCATTTTACTTGTCTCAAGAAATGACAAATCATGTAGATTATCTCAAAGGGGAGGCCTTTAAGAACTTTTGGGATGCTCTGAGGGCATTCTATCAAGGGCTCCCACATGGAAAAGTTGCTCACTTTGCAGCTATTTCAGCAATTCTTGAAGCTATACCAGAAGATTGTGATACCATACACATAATAGACTTTTGTATGGTATATGGGGTTCAGTGGGTTCCACTATTGGAGGCCATTGCACACCATCACAAAACAGTGAAATTGACATCAATCAAATGGGGTGATGAATGCCCTGAATTTGTTTCCAACCCTTGCAATTTTGAGGAAACCAAAAGGCAACTCTATGAGCAAGCCAAATCCTGTGGTTTGAAATTGGAGATTGAGGAAAAGGGATTGGAAGAAGTGGTTACTGAGATTAAAGAAATGAACAAAAGGGGTGGGAGGAAAGAGTTTTTGGCCTTCAATTGTATGGTAGGTCTTCCACATATGGGGAGGGTAAGGAGCAGAAGATTTCATGCTAAGGTGTTTCTAAAGGTGGCTGAGGATTTGATCAAAAGCTCTGGTAGCAAGGGAATTATCACTTTTGGGGATGGTGGTGCATTTGAGAAATTGAAAAATAGCTTGAATTTCAGGTCATATTTTGAAGGGCACTTGGTGCACTACCAGGCCTTGTTAGAATCGATTGAACCACATTTCACAACTCATTTCTCAGAAGCAAGAACTGTCTGTGAGTGCCTATTTGTGGCTCCTTATATATCTTCTCTAGATTGGTTACAAACATGGGAGGAAATGAAAAGGGATTGCCATCTTGAGGCAGAGATTAGCATAGAGGGTTGTAGTTTGAGCAAAAACATATTAATGGAAGTCAGTGAAGTGTTGAGAGGATGTGAAGGTTCATATCAGGCCAGGATTGAAGGACAGTATGGCAATGAACTGGTTTTGGAATTTAAAGGAACCCAACTATTAAGAGTTTCAATTTGGAAAAACTAA 1581 0.4149 MDSIFHQVVEPYNFTMVDHVGDCGPYGIIIDNQVGDYEFSTLLSTSEGTPSETCSTPFPAIINPNDHIQYPIDEEILQLPSLMEFDGFDSILSAHMVGIHGHGDPQESEGSFPSQNLPSEVGDAWSPTLSEKSELSSIQPSLTLPQENMEIDNQVSLLHLIEAFAEALEQGQKALASVILRCINQKVSLLGESLERFAFYLSQEMTNHVDYLKGEAFKNFWDALRAFYQGLPHGKVAHFAAISAILEAIPEDCDTIHIIDFCMVYGVQWVPLLEAIAHHHKTVKLTSIKWGDECPEFVSNPCNFEETKRQLYEQAKSCGLKLEIEEKGLEEVVTEIKEMNKRGGRKEFLAFNCMVGLPHMGRVRSRRFHAKVFLKVAEDLIKSSGSKGIITFGDGGAFEKLKNSLNFRSYFEGHLVHYQALLESIEPHFTTHFSEARTVCECLFVAPYISSLDWLQTWEEMKRDCHLEAEISIEGCSLSKNILMEVSEVLRGCEGSYQARIEGQYGNELVLEFKGTQLLRVSIWKN. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01484 526 Coils Coil 322 342 - -
Seca1g01484 526 Pfam GRAS domain family 158 525 IPR005202 -
Seca1g01484 526 ProSiteProfiles GRAS family profile. 148 525 IPR005202 -
Seca1g01484 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 141 490 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01484 Seca-Chr1 22949340 22950920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01484 176 452 GRAS Transcription Factor Family AT5G66770 28.472 8.80e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca1g01484 GRAS 7.5e-34 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01484 - - gmx:100792407 700.279