Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01478 ATGCTTGACAAGCTTGGTGGTGCCTTTGCGCCAAAGCCATCATCTGGACCCCATAAATCAAGGGAGTGCCTGCCTTTGATCCTTATTCTGCGAAACAGACTAAAATATGCTCTCACATATAGAGAAGTAATTTCCATCTTAATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGGACTGACAAGACGTACCCTGCTGGTTTTATGGATGTCGTATCTATTCCTAAGACAAATGAAAATTTCCGTCTTCTTTATGACACAAAGGGTCGGTTCCGTCTCCACTCTGTCAGGGATGATGAGGCAAAGTTTAAACTTTGCAAGGTACGATCTATTCAGTTTGGGCAGAAAGGGATCCCCTATCTGAACACCTACGATGGCCGCACCATCCGATATCCTGATCCTCTAATCAAGGCTAATGACACTATCAAATTAGACTTGGAACTTAACAAAATCACTGATTACATCAAATTTGATGTGGGGAATGTTGTTATGGTGACTGGAGGAAGGAACAGAGGTCGTGTTGGTGTCATCAAGAACAGGGAGAAGCACAAAGGAAGTTTTGAGACCATCCACATCCAGGATTCCACTGGTCATGAGTTTGCTACCCGTATGGGTAATGTCTTCATTATTGGCAAAGGGACAAAGCCTTGGGTGTCTCTTCCCAAGGGCCGGGGTATCAAATTGTCTATCATTGAAGAGGCTAGAAAGAGGCTTGCTGCTCAACAGGAGGCTACTGCTTAA 741 0.4453 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLELNKITDYIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRMGNVFIIGKGTKPWVSLPKGRGIKLSIIEEARKRLAAQQEATA. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01478 246 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 236 IPR000876 GO:0003735|GO:0005840|GO:0006412
Seca1g01478 246 FunFam 40S ribosomal protein S4 1 99 - -
Seca1g01478 246 Gene3D - 1 99 IPR036986 GO:0003723
Seca1g01478 246 Pfam KOW motif 159 192 IPR005824 -
Seca1g01478 246 Gene3D - 157 227 IPR014722 -
Seca1g01478 246 Hamap 30S ribosomal protein S4e [rps4e]. 3 220 IPR000876 GO:0003735|GO:0005840|GO:0006412
Seca1g01478 246 CDD KOW_RPS4 157 211 IPR041982 -
Seca1g01478 246 Pfam S4 domain 29 72 IPR002942 GO:0003723
Seca1g01478 246 Pfam 40S ribosomal protein S4 C-terminus 194 241 IPR032277 -
Seca1g01478 246 CDD S4 33 94 - -
Seca1g01478 246 FunFam 40S ribosomal protein S4 157 227 - -
Seca1g01478 246 Pfam Ribosomal family S4e 77 151 IPR013845 -
Seca1g01478 246 Gene3D - 104 153 IPR038237 -
Seca1g01478 246 ProSiteProfiles S4 RNA-binding domain profile. 24 86 - -
Seca1g01478 246 FunFam 40S ribosomal protein S4 104 154 - -
Seca1g01478 246 PIRSF RPS4a_RPS4e 1 223 IPR000876 GO:0003735|GO:0005840|GO:0006412
Seca1g01478 246 SMART s4_6 24 88 IPR002942 GO:0003723
Seca1g01478 246 Pfam RS4NT (NUC023) domain 1 21 IPR013843 -
Seca1g01478 246 SMART kow_9 156 183 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01478 Seca-Chr1 22901611 22904170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01478 1 244 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 92.213 6.09e-173 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01478 K02987 - gmx:100500000 456.832