Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g01458 | ATGCACGTTACTCTCTTCATTCTACTTTTCTTCTCCTTCTTCTTCTTTCACCACGTTGTTTCTCTCTCCTCCGACGGCCTTGCCCTTCTCACTCTAAAATCCGCCGTCGATGGCGACGGCGCCGCAGCATTCTCCGACTGGAATGACGGCGACGCCACCCCGTGCCGGTGGTCCGGCATCAGCTGCGCCAACATCTCCGGCGACCCTGACCCCCGCGTCGTCGGCGTTGGTCTCGCCGGCAAGGGTCTCCGCGGTTACCTACCATCGGAGCTCGGTAACCTCCGCTACCTCCGGCGCCTGAGCCTCCACACCAACGCTTTCCATGGCTCCATCCCTTCACAGCTCTTCAACGCCACCGCGCTTCACAGCGTTTTCCTCCACGGTAACAACCTCTCCGGCAACCTTCCTCCCTCCGTTTTCAATCTCCCTCGCCTCCAAAACCTCGACCTCTCCGACAACTCTCTCGCCGGCGCCATCCCTAACTCCCTCGGAAACTGCACGCAGCTCCAGCGTCTAATCCTCGCACGCAACAATTTCTCCGGCGAGATTCCGGCGACTCCTTGGCCGGAGTTGAAGAACCTCGTCCAGCTCGACCTCTCCGCGAACCTTCTAGAAGGTTCAATCCCTGACCAAATCGGCGACCTGAGCTCTCTCTCCGGAACCCTAAACCTATCCTTCAACCACCTCTCCGGTAGGGTTCCAAAGTCCCTCGGGAAATTGCCTGTGACGGTGAGCTTCGATCTTCGAAACAACGATCTCAGTGGCGAGATTCCTCAAACGGGGTCGTTTTCGAACCAGGGACCCACAGCGTTCCTCAACAACCCGAACCTTTGCGGTTTCCCTTTGCAAAATTCGTGTAACGGTTCGGCACCGAGTGAACCGGGATCGAGTCCCGGTTTGGCTCGTGAACCGGGGAGCCGGTCCAAGAAAGGGTTAAGCCCCGGTTTGATTATTTTGATCTCAGTGGCTGATGCTGCTGGTGTGGCTTTGATTGGGCTTGTGGTTGTGTATGTTTATTGGAAGAAGAAGGACAAGTCCAATGGGTGTAGTTGTACTGGGAAGAGAAAGTTTGGTGGTAGTGAGAACAATGAGAAAGCAAGTTTGTGTTGTTTTTGTGGGTCTTTGAAGTGTGTTAATGGGTTTAGAAGTGATGATTCTGAGATGGAGGATGGTGAGAAAGGAGGAGAGGGTGGGAGAGGGGAAGGGGAAGGGGATTTGGTGGCCATTGATAAAGGTTTCAATTTTGAGCTTGATGAGCTGTTGAGGGCCTCTGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAGGTGGTGCTTGGGAATGGGGTTCCTGTGGCTGTGAGGAGATTGGGGGAGGGTGGGGAACAGAGGTACAAGGAGTTTGCTGCTGAAGTTCAAGCCATTGGGAAAGTGAAGCACCCTAATATTGTGAAGTTGAGAGCTTATTACTGGGCTCCTGATGAAAAGCTTTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGGGAGAAATGGCCAACCATCACCGAATCTTTCATGGTCAACCAGGCTGAGAATAGCCAAAGGAACAGCTAGGGGTTTGGCTTATCTCCATGAATGCAGTCCAAGAAAATTTGTTCATGGTGACATAAAACCCTCCAATATCCTCCTTGATGCAGAATTCCAACCCCACATTTCTGATTTTGGTCTTAACCGGCTAATTAGCATCACTGGCAACAACCCCTCTTCTGGTGGCTTTATGGGTGGAGCTCTTCCTTACTTGAAGTCATCACAAACAGAGCGAACTAACAACTATAAAGCCCCTGAGGCTCGAGTTCCAGGCTGCAGACCTACACAGAAATGGGATGTGTATTCATTTGGAGTTATATTACTTGAATTGCTTACTGGAAAGTCCCCTGATTCTTCTCCAGCAGCATCAACTTCTATGGAAGTCCCTGACTTGGTGAGGTGGGTAAGGAAAGGGTTTGAACAAGAAAGCCCATTATCTGAAATGGTTGATCCATCCCTTCTCCAAGAAGTTCATGCCAAGAAAGAGGTACTAGCTGTGTTTCATGTGGCACTATCATGCACTGAGGGAGACCCTGAGGTCAGGCCTAGAATGAAAAGTGTCTCTGAAAATCTTGAAAGAATATGA | 2154 | 0.5111 | MHVTLFILLFFSFFFFHHVVSLSSDGLALLTLKSAVDGDGAAAFSDWNDGDATPCRWSGISCANISGDPDPRVVGVGLAGKGLRGYLPSELGNLRYLRRLSLHTNAFHGSIPSQLFNATALHSVFLHGNNLSGNLPPSVFNLPRLQNLDLSDNSLAGAIPNSLGNCTQLQRLILARNNFSGEIPATPWPELKNLVQLDLSANLLEGSIPDQIGDLSSLSGTLNLSFNHLSGRVPKSLGKLPVTVSFDLRNNDLSGEIPQTGSFSNQGPTAFLNNPNLCGFPLQNSCNGSAPSEPGSSPGLAREPGSRSKKGLSPGLIILISVADAAGVALIGLVVVYVYWKKKDKSNGCSCTGKRKFGGSENNEKASLCCFCGSLKCVNGFRSDDSEMEDGEKGGEGGRGEGEGDLVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAPDEKLLISDFISNGNLATALRGRNGQPSPNLSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDAEFQPHISDFGLNRLISITGNNPSSGGFMGGALPYLKSSQTERTNNYKAPEARVPGCRPTQKWDVYSFGVILLELLTGKSPDSSPAASTSMEVPDLVRWVRKGFEQESPLSEMVDPSLLQEVHAKKEVLAVFHVALSCTEGDPEVRPRMKSVSENLERI. | 718 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g01458 | 717 | SMART | LRR_typ_2 | 142 | 166 | IPR003591 | - | |
Seca1g01458 | 717 | SMART | LRR_typ_2 | 94 | 118 | IPR003591 | - | |
Seca1g01458 | 717 | SMART | LRR_typ_2 | 191 | 215 | IPR003591 | - | |
Seca1g01458 | 717 | SUPERFAMILY | L domain-like | 24 | 283 | - | - | |
Seca1g01458 | 717 | Gene3D | Ribonuclease Inhibitor | 188 | 288 | IPR032675 | - | |
Seca1g01458 | 717 | Pfam | Protein kinase domain | 427 | 646 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g01458 | 717 | ProSiteProfiles | Protein kinase domain profile. | 422 | 717 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g01458 | 717 | Gene3D | Phosphorylase Kinase; domain 1 | 410 | 497 | - | - | |
Seca1g01458 | 717 | Gene3D | Ribonuclease Inhibitor | 22 | 187 | IPR032675 | - | |
Seca1g01458 | 717 | SMART | serkin_6 | 426 | 717 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g01458 | 717 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 191 | 717 | IPR046959 | - | |
Seca1g01458 | 717 | Pfam | Leucine rich repeat N-terminal domain | 23 | 62 | IPR013210 | - | |
Seca1g01458 | 717 | MobiDBLite | consensus disorder prediction | 288 | 309 | - | - | |
Seca1g01458 | 717 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 545 | 557 | IPR008271 | GO:0004672|GO:0006468 | |
Seca1g01458 | 717 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 498 | 717 | - | - | |
Seca1g01458 | 717 | CDD | STKc_IRAK | 428 | 717 | - | - | |
Seca1g01458 | 717 | FunFam | Leucine-rich repeat receptor-like protein kinase | 193 | 288 | - | - | |
Seca1g01458 | 717 | PRINTS | Leucine-rich repeat signature | 145 | 158 | - | - | |
Seca1g01458 | 717 | PRINTS | Leucine-rich repeat signature | 191 | 204 | - | - | |
Seca1g01458 | 717 | FunFam | Leucine-rich repeat receptor-like protein kinase | 405 | 497 | - | - | |
Seca1g01458 | 717 | Gene3D | Transferase(Phosphotransferase) domain 1 | 498 | 717 | - | - | |
Seca1g01458 | 717 | Pfam | Leucine rich repeat | 120 | 179 | IPR001611 | GO:0005515 | |
Seca1g01458 | 717 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 22 | 189 | - | - | |
Seca1g01458 | 717 | SUPERFAMILY | Protein kinase-like (PK-like) | 427 | 714 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g01458 | Seca-Chr1 | 22404877 | 22409750 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g01458 | 20 | 717 | Receptor kinase-like Gene Family | AT1G67510 | 70.547 | 0.0 | 995 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-III | Seca1g01458 | Pkinase | 1.7e-32 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g01458 | - | - | gmx:100795021 | 1180.62 |