Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01458 ATGCACGTTACTCTCTTCATTCTACTTTTCTTCTCCTTCTTCTTCTTTCACCACGTTGTTTCTCTCTCCTCCGACGGCCTTGCCCTTCTCACTCTAAAATCCGCCGTCGATGGCGACGGCGCCGCAGCATTCTCCGACTGGAATGACGGCGACGCCACCCCGTGCCGGTGGTCCGGCATCAGCTGCGCCAACATCTCCGGCGACCCTGACCCCCGCGTCGTCGGCGTTGGTCTCGCCGGCAAGGGTCTCCGCGGTTACCTACCATCGGAGCTCGGTAACCTCCGCTACCTCCGGCGCCTGAGCCTCCACACCAACGCTTTCCATGGCTCCATCCCTTCACAGCTCTTCAACGCCACCGCGCTTCACAGCGTTTTCCTCCACGGTAACAACCTCTCCGGCAACCTTCCTCCCTCCGTTTTCAATCTCCCTCGCCTCCAAAACCTCGACCTCTCCGACAACTCTCTCGCCGGCGCCATCCCTAACTCCCTCGGAAACTGCACGCAGCTCCAGCGTCTAATCCTCGCACGCAACAATTTCTCCGGCGAGATTCCGGCGACTCCTTGGCCGGAGTTGAAGAACCTCGTCCAGCTCGACCTCTCCGCGAACCTTCTAGAAGGTTCAATCCCTGACCAAATCGGCGACCTGAGCTCTCTCTCCGGAACCCTAAACCTATCCTTCAACCACCTCTCCGGTAGGGTTCCAAAGTCCCTCGGGAAATTGCCTGTGACGGTGAGCTTCGATCTTCGAAACAACGATCTCAGTGGCGAGATTCCTCAAACGGGGTCGTTTTCGAACCAGGGACCCACAGCGTTCCTCAACAACCCGAACCTTTGCGGTTTCCCTTTGCAAAATTCGTGTAACGGTTCGGCACCGAGTGAACCGGGATCGAGTCCCGGTTTGGCTCGTGAACCGGGGAGCCGGTCCAAGAAAGGGTTAAGCCCCGGTTTGATTATTTTGATCTCAGTGGCTGATGCTGCTGGTGTGGCTTTGATTGGGCTTGTGGTTGTGTATGTTTATTGGAAGAAGAAGGACAAGTCCAATGGGTGTAGTTGTACTGGGAAGAGAAAGTTTGGTGGTAGTGAGAACAATGAGAAAGCAAGTTTGTGTTGTTTTTGTGGGTCTTTGAAGTGTGTTAATGGGTTTAGAAGTGATGATTCTGAGATGGAGGATGGTGAGAAAGGAGGAGAGGGTGGGAGAGGGGAAGGGGAAGGGGATTTGGTGGCCATTGATAAAGGTTTCAATTTTGAGCTTGATGAGCTGTTGAGGGCCTCTGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAGGTGGTGCTTGGGAATGGGGTTCCTGTGGCTGTGAGGAGATTGGGGGAGGGTGGGGAACAGAGGTACAAGGAGTTTGCTGCTGAAGTTCAAGCCATTGGGAAAGTGAAGCACCCTAATATTGTGAAGTTGAGAGCTTATTACTGGGCTCCTGATGAAAAGCTTTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGGGAGAAATGGCCAACCATCACCGAATCTTTCATGGTCAACCAGGCTGAGAATAGCCAAAGGAACAGCTAGGGGTTTGGCTTATCTCCATGAATGCAGTCCAAGAAAATTTGTTCATGGTGACATAAAACCCTCCAATATCCTCCTTGATGCAGAATTCCAACCCCACATTTCTGATTTTGGTCTTAACCGGCTAATTAGCATCACTGGCAACAACCCCTCTTCTGGTGGCTTTATGGGTGGAGCTCTTCCTTACTTGAAGTCATCACAAACAGAGCGAACTAACAACTATAAAGCCCCTGAGGCTCGAGTTCCAGGCTGCAGACCTACACAGAAATGGGATGTGTATTCATTTGGAGTTATATTACTTGAATTGCTTACTGGAAAGTCCCCTGATTCTTCTCCAGCAGCATCAACTTCTATGGAAGTCCCTGACTTGGTGAGGTGGGTAAGGAAAGGGTTTGAACAAGAAAGCCCATTATCTGAAATGGTTGATCCATCCCTTCTCCAAGAAGTTCATGCCAAGAAAGAGGTACTAGCTGTGTTTCATGTGGCACTATCATGCACTGAGGGAGACCCTGAGGTCAGGCCTAGAATGAAAAGTGTCTCTGAAAATCTTGAAAGAATATGA 2154 0.5111 MHVTLFILLFFSFFFFHHVVSLSSDGLALLTLKSAVDGDGAAAFSDWNDGDATPCRWSGISCANISGDPDPRVVGVGLAGKGLRGYLPSELGNLRYLRRLSLHTNAFHGSIPSQLFNATALHSVFLHGNNLSGNLPPSVFNLPRLQNLDLSDNSLAGAIPNSLGNCTQLQRLILARNNFSGEIPATPWPELKNLVQLDLSANLLEGSIPDQIGDLSSLSGTLNLSFNHLSGRVPKSLGKLPVTVSFDLRNNDLSGEIPQTGSFSNQGPTAFLNNPNLCGFPLQNSCNGSAPSEPGSSPGLAREPGSRSKKGLSPGLIILISVADAAGVALIGLVVVYVYWKKKDKSNGCSCTGKRKFGGSENNEKASLCCFCGSLKCVNGFRSDDSEMEDGEKGGEGGRGEGEGDLVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAPDEKLLISDFISNGNLATALRGRNGQPSPNLSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDAEFQPHISDFGLNRLISITGNNPSSGGFMGGALPYLKSSQTERTNNYKAPEARVPGCRPTQKWDVYSFGVILLELLTGKSPDSSPAASTSMEVPDLVRWVRKGFEQESPLSEMVDPSLLQEVHAKKEVLAVFHVALSCTEGDPEVRPRMKSVSENLERI. 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01458 717 SMART LRR_typ_2 142 166 IPR003591 -
Seca1g01458 717 SMART LRR_typ_2 94 118 IPR003591 -
Seca1g01458 717 SMART LRR_typ_2 191 215 IPR003591 -
Seca1g01458 717 SUPERFAMILY L domain-like 24 283 - -
Seca1g01458 717 Gene3D Ribonuclease Inhibitor 188 288 IPR032675 -
Seca1g01458 717 Pfam Protein kinase domain 427 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01458 717 ProSiteProfiles Protein kinase domain profile. 422 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01458 717 Gene3D Phosphorylase Kinase; domain 1 410 497 - -
Seca1g01458 717 Gene3D Ribonuclease Inhibitor 22 187 IPR032675 -
Seca1g01458 717 SMART serkin_6 426 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01458 717 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 191 717 IPR046959 -
Seca1g01458 717 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Seca1g01458 717 MobiDBLite consensus disorder prediction 288 309 - -
Seca1g01458 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Seca1g01458 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 498 717 - -
Seca1g01458 717 CDD STKc_IRAK 428 717 - -
Seca1g01458 717 FunFam Leucine-rich repeat receptor-like protein kinase 193 288 - -
Seca1g01458 717 PRINTS Leucine-rich repeat signature 145 158 - -
Seca1g01458 717 PRINTS Leucine-rich repeat signature 191 204 - -
Seca1g01458 717 FunFam Leucine-rich repeat receptor-like protein kinase 405 497 - -
Seca1g01458 717 Gene3D Transferase(Phosphotransferase) domain 1 498 717 - -
Seca1g01458 717 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Seca1g01458 717 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 22 189 - -
Seca1g01458 717 SUPERFAMILY Protein kinase-like (PK-like) 427 714 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01458 Seca-Chr1 22404877 22409750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01458 20 717 Receptor kinase-like Gene Family AT1G67510 70.547 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca1g01458 Pkinase 1.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01458 - - gmx:100795021 1180.62