Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01449 ATGGGGAAGAAGCAGAAGCAGAAGATCGTTCTTCCACCGGACCTCCCGCCGGAGATTCCAGACGACGAAGTTGAGATATCCGACGATGACCTCCAATTCGTCAAGGAGAACCGCGCCTATGCCTCCTTGCTTTCCAACTTGGACACCCAATCAATCACCAATGTTGTTGCTTTCAAGTTTGCGGGTTTTGTGGGCGCCGAGAGCGAATCTTGGTGGAAGGTTTCCTGCTGGCTTGACAGATTCATGCTCTCTAAGAGTACTCAATTTGGCATAGAATTATTGGGATATCTGCCTTCTCAGCAGCTTCAGGTTCCTTGTATGATGTACTTCAATATCAGCAGGAATAATATGTCTGGCATGCTTCCAGGATTTATGAGAGAAAGCTGTTCTGAGAGTAACAACCCTGCTGCACTAGACCCTGCATTCCCAGAGTTGGGAGGTTTTAATGATGCATACTTTAGTAATCCTGTTTTGAGATTCCAAAAGAATGCTCTCATTCGATCGGGTTTTGGGGAGACTATTGTTGTTAGACACGATTTCAGTTGGAACAGTTTTGTGGGATCCTTACCTTTGTTCTCTCTTGGAGTTAATCTTTTTACTGCAGGTCGTAATGTTTCCTACATGCTGTCTCTCAATAATAATAAGTTCAATGGAACTCTACCTTATCAGCTAGTTTCTAATTGCAGTGACCTCAAGACATTGTCAGTTAACTTGAGTGTGAATCAACTATCCGGTGGGCACTCCCATGCATTGTTTCGGGACTGCCTCCAGTTGACAGATTTTGAAGCAGCATACAACCAGATCTTTCTAAACTTTTTGAGTGTTTATTTCCTTGCTGATATAACTTTCTTGTCCATATATAGGCATGTCACACGGGTTGCTGATGCCAAAGACGATGCCTTGGAGAAACTTTATGAGCAACGCTTGCAAAGAAATGCTCTCAAGAAAGAAAAAGAAGAAACATGTATACAGGTTGATCGAGTAGATGCTCTTCCAGTCAAGACATTGGATGGAAAACTCTATTACCGTACAGCTACAAAGACAGTATCAGAAAATGGTCCAAGTGAAGAGGAAACCGGAGAGGATGGCAACGCAGACAAAGGTCTAGTGAAGCTAACCAAGGCCGAAAAGCGAGCTAAACTTAAGAAAATAAGAAAAGAGGAAAAAAAACAAGGGAAAGAGGTGGCTAAAGCAGAAGTGGCAGAAACACCACAAGCAGCAGTATTGGCTGAGGTTAAAGAAGACCTTAAAGCTGAGGAGACATTTGAAAGTAAAAAGTGTAAACTTGCAGAGTTGGGAAATGCCTTGCTTACAGACCCAGAGTCCCATATTAAATCGCTGAAGGAGATGGTACAGATATCTAAAGATAGTGATCCTACCATTGTTAAACTTGGACTGCTATCCCTCTTGGCTGTTTTCAAAGATATTGTACCTGGCTATCGAATCAGGCTTCCTACTGAGAAGGAACTAGAGATGAAGGTTTCAAAGACTGTTAGAAAGATGCGTTATTATGAATCAACTCTTCTTTCTGCATACAAGGCATACTTGCAAAGGCTGATAGCCTTAGAAACAAAGCCTTTATTTCAGCATGTTGCAGTTCGTTGTATTTGTTCTTTGCTTGATGCAAACCCCCATTTCAACTTTCGTGAAAGCTTGTTGGATGCTACTGTCAGAAACATAAGCTCCACTAATGAGGCCATCAGGAAACTTTGTTGTTCCACAATTAAGTCACTCTTTACAAATGAAGGTAAACATGGTGGTGAAGTTACAGTGGAGGCTGTTCGATTGATCTCCGATCATGTTAAAGCTCATAATTGCCAGTTGCACCCTGATTCCGTTGAGGTTTTCTTGTCTCTTTCATTTGATTTGGATCTTGGGAAGTCTGAAAAGATAGATGAGGATCTGAAATCAAAAAACAAGAAAAGTAAGAAAAGAAAAAACATGGAGGCATCAAATCAGTTGCCAGAAAATGACAGAAAGAAAAGTAGGCAAGAGTCGATTTCTAAGACAAGAGAGGAGGTTGAAGCTGATTACAAGGCTGCATCCTTTACCACAGATGTTATGGAGCGAAGAGAGATGCAAACTAAAACACTCTCTGCTATGTTTGAGACATACTTTCGCATTTTGAAACATACAATGCAGTCCATAGTTGTCAGGCCTGAAGCAAACCCTGGGGCATTATCTGCTACAGTGGAATCCCACCCATTGCTTGATCCATGTTTGAAAGGACTGGCGAAATTTTCACACTTGATTGACCTTGATTTCATGGGTGATCTAATGAAACATCTGAAAATACTTGCTTCTGGAAGTAGCAACTCAAGCAACACTTCTGAGAAGTCTCCTAAATGTTTGAGCGTATCTGAACGTCTCCAATGTTGCATTGTTGCTTTTAAAGTGATGAGGACCAATCTTGATGCCTTGAATGTTGATTTACACGACTTCTTTGTCCATCTTTACAATCTCGTACTTGAATACATGCCAGGAAGGCAAAATAGGGGTGAACATAAAGGAGCAGGGCCTGAGTCACTTTCTGTTACTGATAGTGAGTTAGTGACACTGATGTCAGTCACTGTTAGTAACAGAGATCAAGGAGAGGTGTTAGCAGAAGCTTTGAAGATAATGTTGTGTGACGATAGGCAACATGACATGCAAAAGACTGCTGCATTTATAAAACGTTTGGCTACATTGTCACTGTGCGTTGGATCTGCTGATTCCATGGCTGCATTGGTCACAGTAAAGCATCTCCTTCTGAAGAACGTTAAGTGCAGAAATCTGTTGGAAAATGACACTGGAGGGGGTTCTGTTTCTGGCACAATTGCAAAATATCAACCATATTCCACAGACCCTAATTTAAGTGGTGCCCTTGCCTCAGTACTTTGGGAACTCAGTCTTTTGTCTAAGCATTATCATCCAGCCATATCAACAATGGCATCAGGCATTTCAAGTATGAGTACTGCACATAACCAAGTTTTACACTCCAAGTCCTCTCCTCAACAAGCTTTTAAGGACATGTCTCTTGACCAGGAATTGTGTTTTACACAAAGTAGCAGTATAAAATTAAATAACAAGAGGAGGAAAACAAATGGCAGTGCTGCACCACCTTCCATTAGTTCTACAACAGTAATGAGTTCATTCAATGAGGATGAGTTGCAGAGGAAACTCAGTTCCCATTTCATGCTCCTTCATGACATCAAGGAAAATGAAAGGTTGAGAAGTGAGTTGGATAGGACTTCAAGATCATTACAGCTATATGAACAGTATAAGAAACAAAAGAAGCAACGATCAAAACCAAGAAAATGA 3300 0.4121 MGKKQKQKIVLPPDLPPEIPDDEVEISDDDLQFVKENRAYASLLSNLDTQSITNVVAFKFAGFVGAESESWWKVSCWLDRFMLSKSTQFGIELLGYLPSQQLQVPCMMYFNISRNNMSGMLPGFMRESCSESNNPAALDPAFPELGGFNDAYFSNPVLRFQKNALIRSGFGETIVVRHDFSWNSFVGSLPLFSLGVNLFTAGRNVSYMLSLNNNKFNGTLPYQLVSNCSDLKTLSVNLSVNQLSGGHSHALFRDCLQLTDFEAAYNQIFLNFLSVYFLADITFLSIYRHVTRVADAKDDALEKLYEQRLQRNALKKEKEETCIQVDRVDALPVKTLDGKLYYRTATKTVSENGPSEEETGEDGNADKGLVKLTKAEKRAKLKKIRKEEKKQGKEVAKAEVAETPQAAVLAEVKEDLKAEETFESKKCKLAELGNALLTDPESHIKSLKEMVQISKDSDPTIVKLGLLSLLAVFKDIVPGYRIRLPTEKELEMKVSKTVRKMRYYESTLLSAYKAYLQRLIALETKPLFQHVAVRCICSLLDANPHFNFRESLLDATVRNISSTNEAIRKLCCSTIKSLFTNEGKHGGEVTVEAVRLISDHVKAHNCQLHPDSVEVFLSLSFDLDLGKSEKIDEDLKSKNKKSKKRKNMEASNQLPENDRKKSRQESISKTREEVEADYKAASFTTDVMERREMQTKTLSAMFETYFRILKHTMQSIVVRPEANPGALSATVESHPLLDPCLKGLAKFSHLIDLDFMGDLMKHLKILASGSSNSSNTSEKSPKCLSVSERLQCCIVAFKVMRTNLDALNVDLHDFFVHLYNLVLEYMPGRQNRGEHKGAGPESLSVTDSELVTLMSVTVSNRDQGEVLAEALKIMLCDDRQHDMQKTAAFIKRLATLSLCVGSADSMAALVTVKHLLLKNVKCRNLLENDTGGGSVSGTIAKYQPYSTDPNLSGALASVLWELSLLSKHYHPAISTMASGISSMSTAHNQVLHSKSSPQQAFKDMSLDQELCFTQSSSIKLNNKRRKTNGSAAPPSISSTTVMSSFNEDELQRKLSSHFMLLHDIKENERLRSELDRTSRSLQLYEQYKKQKKQRSKPRK. 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01449 1099 SUPERFAMILY ARM repeat 445 826 IPR016024 -
Seca1g01449 1099 MobiDBLite consensus disorder prediction 347 368 - -
Seca1g01449 1099 Pfam CBF/Mak21 family 790 977 IPR005612 -
Seca1g01449 1099 Gene3D Ribonuclease Inhibitor 179 273 IPR032675 -
Seca1g01449 1099 Pfam Nucleolar complex-associated protein 425 515 IPR011501 -
Seca1g01449 1099 MobiDBLite consensus disorder prediction 634 673 - -
Seca1g01449 1099 Coils Coil 1067 1087 - -
Seca1g01449 1099 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 277 1085 IPR016903 -
Seca1g01449 1099 MobiDBLite consensus disorder prediction 646 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01449 Seca-Chr1 22298061 22309787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01449 1 52 Core DNA Replication Machinery Family AT1G79150 49.057 4.51e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01449 K14834 - gmx:100776136 1204.89