Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01437 ATGGGTGGCTGTTGCAGCCACGATGTTTCTGTTCGAGGCAAGGTGGAAAGCGAGGTGGATGATGGAGAATATGAGTATGATCATGAGAATATTAGTGATGTCACGTATGAACATGGTGGAGCAATGATAAGGTTTAGAGGATCCTCTAGGTTTGTATCAATGTACACCCAACAGGGTAAGAAAGGTGTGAACCAAGATTCAATGACAGTTTGGGAGGACTTCACTGGAGAAAAAGATATGATCTTTTGTGGTGTGTTCGATGGTCATGGTCCTCTAGGCCACAAGGTTTCCCAATTTATTCGTGACAATCTACCCTCAGAACTTTCTGCAGCAATCAAAATGTCACAACAAAAGGCCTGCAAATATTATGATGCTAATGATGCAGATACTGACACTTTTGAAGATGCCTATAATGAGAATAACCACAACATGTCCCTTGCTTCATGGGAAGGATGCTTTCTGAAATCCTTTGATGAGATGGATGAACATCTTGCTCAGGAAATTAACACTGACAGCTATTGCAGTGGTTGCACAGCTGTAACATTAATTAAACAGGGTGACCAGCTTATAGTTGGCAATTTGGGTGATTCTCGTGCAGTACTTTGCACAAGGGACAGAGACCAACTCATTCCTGTTCAACTCACTGTTGACTTGAAACCAGATATTCCAAGTGAGGCTTCAAGAATCATTAACTGTGAAGGAAGAGTTTTTGCAGCAGAAGAAGAACCAGATGTGTACAGAATATGGATGCCTGATGATGACTGCCCTGGACTAGCTATGTCAAGAGCCTTTGGAGACTTCTGCCTGAAAGACTATGGCCTCATTGCAGTTCCTGATGTGTTTTATAGAAAAATCACCAAGCAAGATGAGTTTGTGGTTTTGGCAACTGATGGGGTATGGGATGTGCTGAGTAACAGTGAAGTAATAAACATAGTTGCTTCAGCACCAAGGAGGTCCATAGCAGCTAAATTGTTAGTGAAGCGTGCTGTTAGAGCCTGGAGATACAAGTATCCTGGTTCCAAGGTTGATGATTGTGCAGTCATTATCTTGTTTCTGGATGATCAACCTGTTTTATCCCATTCACAATCAAGAGGGAGTAGAAAAAGCAGACACCGCCATAGAAATGAAGACACTGAAACTGTGGATGGAAAAGTTGGGGTTGAATTGGATGAAGAATGGAAAGCTCTTGGAGGGTTGGTTAGAGCTAACTCTATATCAAAACTTCCAAGGCTTGCTAGGGAATTGAGTAAACGCCAATCATCAAAGCACCTTAAAGGGAGTTGA 1284 0.4221 MGGCCSHDVSVRGKVESEVDDGEYEYDHENISDVTYEHGGAMIRFRGSSRFVSMYTQQGKKGVNQDSMTVWEDFTGEKDMIFCGVFDGHGPLGHKVSQFIRDNLPSELSAAIKMSQQKACKYYDANDADTDTFEDAYNENNHNMSLASWEGCFLKSFDEMDEHLAQEINTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCTRDRDQLIPVQLTVDLKPDIPSEASRIINCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIAVPDVFYRKITKQDEFVVLATDGVWDVLSNSEVINIVASAPRRSIAAKLLVKRAVRAWRYKYPGSKVDDCAVIILFLDDQPVLSHSQSRGSRKSRHRHRNEDTETVDGKVGVELDEEWKALGGLVRANSISKLPRLARELSKRQSSKHLKGS. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01437 427 CDD PP2Cc 50 352 IPR001932 -
Seca1g01437 427 Gene3D - 44 354 IPR036457 -
Seca1g01437 427 Pfam Protein phosphatase 2C 76 329 IPR001932 -
Seca1g01437 427 PANTHER PROTEIN PHOSPHATASE 50 350 IPR015655 GO:0004722|GO:0006470
Seca1g01437 427 ProSiteProfiles PPM-type phosphatase domain profile. 51 352 IPR001932 -
Seca1g01437 427 MobiDBLite consensus disorder prediction 359 381 - -
Seca1g01437 427 SMART PP2C_4 42 350 IPR001932 -
Seca1g01437 427 SUPERFAMILY PP2C-like 45 354 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01437 Seca-Chr1 22000053 22003636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01437 1 356 PP2C-type Phosphatase Gene Family AT5G01700 54.213 8.08e-138 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01437 - - gmx:100783603 746.888