Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g01427 | ATGATCCTCCTTTTCTCCCCCTATATCACTCACTCATACTATTTAATTTTCACTCTTGTCTCCTCCCTACACATCATTTTGCTACCCTCTCATCTCATCTCCCCATATTATAAATTTAAAGTTCAAACCCAACCTTTTCTTCACTTCCTTCCACCCCAATTCATGAGGACATCTTCTTTCACTGACATGCTCTCCAACAACAACAGTAACATGACTTTGGAGGATCATAACTTTGGAACTTCTTCTGAACTTAATCATCAAGTTGGACTTGATGTTCCCAAATTCAAGTCTGTTCAACCTCCTTCACTGCCCCTCTCTCCCTCATCAATTTCCCCTTCTTCTTACTTAGCCTTTTCATCTGGTTTCAGCCCATCTGAGTTCTTGAACTCTCCTTTGTTTCTTTCTTCTCCAAATATTTTTGCATCTCCTACTACTGAGGCTTTTGCTGGCGAGAGCTTTAACTGGAAGAACAGTTCAGGTGAGGAACAACAAAAGGAGAATGAGAAAAACTACTCTGACTTCTCTTTCCAAACACAAGCAAAGCCTGCACCTGTCTTTCAATCTTCCTCAAACATGTTTCAAGTGATTTTTGTTCTACTTGAACAGCAGGAACCAGTTAAGAAACACGACATATGGAAATTCAATGAACCTACAAAGAAAACTGATTTTTCATCAACAAAATCTGAATATCCATCAACTCAGAGCTTTTCCTCAGAAATGGCACCAAGCAAACCAGAAATACAAAATAATTCAGTTTCTGGGTCTGGCCAGTTTAACTACACTAATGCATCTCAGTCTGTTAGAGAGCAAAGGAGATCAGAAGATGGGTTCAACTGGAGAAAATATGGACAGAAACAAGTAAAAGGAAGCGAAAATCCACGCAGTTATTACAAATGCACACATCTGAATTGCTCAATGAGGAAGAAAGTTGAGAGATCTTTGGATGGACAAATTACTGAAATAGTATATAAGGGAAATCATAACCACCCCAAACCCCAGTCTACTAGAAGATGTAGCTCTCAACCAATTCATCAACCTTCTTCATCCTGCACCAACTCAGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGAGCCTGTCTCCATACAAGAAGATTCTTCAGCTTCTGTGGGAGAGGAAGACTATGAACAAACATCACAAACTACTTATTCTGGAGGAGATGGAGATGACCTTGGACCAGAGGCCAAAAGATGGAAGGGAGATAATGAATATGATGGCTATTCAGCCTCAGATAGTAGAACTGTTAGAGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATTGATATACTTGATGATGGCTATAGATGGAGGAAATATGGACAGAAAGTAGTTAAGGGAAACCCAAATGCAAGGAGCTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAAACATATTGAGCGAGCGGCACATGATATCAAAGCTGTGATCACAACTTATGAAGGGAAACACAACCATGATATACCTGCTGCTCGTGGTAGTGCAGGTTATAACATGAACAGAAATTCTCTGAACAGCAACACCAGCAATGTACCAGCACCTATAAGGCCCTCAGCAGTGAACCGTTATTCTAGCTCATCTAGTTTGACAAGTTCACTTTACAATACTAGGCTTCCAACAACTGGAAATCAAGAATCATTTCCACTGGACTTGTTGCAGAGTCCTGGAAATTTTGGGTATTCAGCTCTTGGCAGATCAATGGGTTCATATACCAATCATGCACAATACTCAGATGCAGCATACTCAAAGGCCAAGGAAGAGAGGAATGATGACTCATTCCTTCAGTCATTTCTGTCAAAGGACTTCTAA | 1848 | 0.4048 | MILLFSPYITHSYYLIFTLVSSLHIILLPSHLISPYYKFKVQTQPFLHFLPPQFMRTSSFTDMLSNNNSNMTLEDHNFGTSSELNHQVGLDVPKFKSVQPPSLPLSPSSISPSSYLAFSSGFSPSEFLNSPLFLSSPNIFASPTTEAFAGESFNWKNSSGEEQQKENEKNYSDFSFQTQAKPAPVFQSSSNMFQVIFVLLEQQEPVKKHDIWKFNEPTKKTDFSSTKSEYPSTQSFSSEMAPSKPEIQNNSVSGSGQFNYTNASQSVREQRRSEDGFNWRKYGQKQVKGSENPRSYYKCTHLNCSMRKKVERSLDGQITEIVYKGNHNHPKPQSTRRCSSQPIHQPSSSCTNSGISDQSVVTLGNPQMEPVSIQEDSSASVGEEDYEQTSQTTYSGGDGDDLGPEAKRWKGDNEYDGYSASDSRTVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHIERAAHDIKAVITTYEGKHNHDIPAARGSAGYNMNRNSLNSNTSNVPAPIRPSAVNRYSSSSSLTSSLYNTRLPTTGNQESFPLDLLQSPGNFGYSALGRSMGSYTNHAQYSDAAYSKAKEERNDDSFLQSFLSKDF. | 616 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g01427 | 615 | Gene3D | WRKY domain | 259 | 333 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01427 | 615 | SUPERFAMILY | WRKY DNA-binding domain | 269 | 332 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01427 | 615 | ProSiteProfiles | WRKY domain profile. | 437 | 502 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01427 | 615 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 133 | 521 | IPR044810 | GO:0003700 | |
Seca1g01427 | 615 | SMART | WRKY_cls | 442 | 501 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01427 | 615 | SMART | WRKY_cls | 273 | 331 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01427 | 615 | FunFam | WRKY transcription factor 33 | 429 | 495 | - | - | |
Seca1g01427 | 615 | MobiDBLite | consensus disorder prediction | 224 | 267 | - | - | |
Seca1g01427 | 615 | FunFam | WRKY transcription factor | 262 | 333 | - | - | |
Seca1g01427 | 615 | SUPERFAMILY | WRKY DNA-binding domain | 434 | 502 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01427 | 615 | ProSiteProfiles | WRKY domain profile. | 268 | 332 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01427 | 615 | MobiDBLite | consensus disorder prediction | 323 | 422 | - | - | |
Seca1g01427 | 615 | MobiDBLite | consensus disorder prediction | 401 | 422 | - | - | |
Seca1g01427 | 615 | Pfam | WRKY DNA -binding domain | 443 | 499 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01427 | 615 | Pfam | WRKY DNA -binding domain | 274 | 330 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01427 | 615 | Gene3D | WRKY domain | 429 | 495 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g01427 | 615 | MobiDBLite | consensus disorder prediction | 222 | 292 | - | - | |
Seca1g01427 | 615 | MobiDBLite | consensus disorder prediction | 328 | 397 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g01427 | Seca-Chr1 | 21902952 | 21906138 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g01427 | 90 | 611 | WRKY Transcription Factor Family | AT2G38470 | 45.185 | 4.31e-114 | 349 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Seca1g01427 | WRKY | 3.6e-23 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g01427 | K13424 | - | gmx:100776837 | 830.861 |