Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01427 ATGATCCTCCTTTTCTCCCCCTATATCACTCACTCATACTATTTAATTTTCACTCTTGTCTCCTCCCTACACATCATTTTGCTACCCTCTCATCTCATCTCCCCATATTATAAATTTAAAGTTCAAACCCAACCTTTTCTTCACTTCCTTCCACCCCAATTCATGAGGACATCTTCTTTCACTGACATGCTCTCCAACAACAACAGTAACATGACTTTGGAGGATCATAACTTTGGAACTTCTTCTGAACTTAATCATCAAGTTGGACTTGATGTTCCCAAATTCAAGTCTGTTCAACCTCCTTCACTGCCCCTCTCTCCCTCATCAATTTCCCCTTCTTCTTACTTAGCCTTTTCATCTGGTTTCAGCCCATCTGAGTTCTTGAACTCTCCTTTGTTTCTTTCTTCTCCAAATATTTTTGCATCTCCTACTACTGAGGCTTTTGCTGGCGAGAGCTTTAACTGGAAGAACAGTTCAGGTGAGGAACAACAAAAGGAGAATGAGAAAAACTACTCTGACTTCTCTTTCCAAACACAAGCAAAGCCTGCACCTGTCTTTCAATCTTCCTCAAACATGTTTCAAGTGATTTTTGTTCTACTTGAACAGCAGGAACCAGTTAAGAAACACGACATATGGAAATTCAATGAACCTACAAAGAAAACTGATTTTTCATCAACAAAATCTGAATATCCATCAACTCAGAGCTTTTCCTCAGAAATGGCACCAAGCAAACCAGAAATACAAAATAATTCAGTTTCTGGGTCTGGCCAGTTTAACTACACTAATGCATCTCAGTCTGTTAGAGAGCAAAGGAGATCAGAAGATGGGTTCAACTGGAGAAAATATGGACAGAAACAAGTAAAAGGAAGCGAAAATCCACGCAGTTATTACAAATGCACACATCTGAATTGCTCAATGAGGAAGAAAGTTGAGAGATCTTTGGATGGACAAATTACTGAAATAGTATATAAGGGAAATCATAACCACCCCAAACCCCAGTCTACTAGAAGATGTAGCTCTCAACCAATTCATCAACCTTCTTCATCCTGCACCAACTCAGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGAGCCTGTCTCCATACAAGAAGATTCTTCAGCTTCTGTGGGAGAGGAAGACTATGAACAAACATCACAAACTACTTATTCTGGAGGAGATGGAGATGACCTTGGACCAGAGGCCAAAAGATGGAAGGGAGATAATGAATATGATGGCTATTCAGCCTCAGATAGTAGAACTGTTAGAGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATTGATATACTTGATGATGGCTATAGATGGAGGAAATATGGACAGAAAGTAGTTAAGGGAAACCCAAATGCAAGGAGCTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAAACATATTGAGCGAGCGGCACATGATATCAAAGCTGTGATCACAACTTATGAAGGGAAACACAACCATGATATACCTGCTGCTCGTGGTAGTGCAGGTTATAACATGAACAGAAATTCTCTGAACAGCAACACCAGCAATGTACCAGCACCTATAAGGCCCTCAGCAGTGAACCGTTATTCTAGCTCATCTAGTTTGACAAGTTCACTTTACAATACTAGGCTTCCAACAACTGGAAATCAAGAATCATTTCCACTGGACTTGTTGCAGAGTCCTGGAAATTTTGGGTATTCAGCTCTTGGCAGATCAATGGGTTCATATACCAATCATGCACAATACTCAGATGCAGCATACTCAAAGGCCAAGGAAGAGAGGAATGATGACTCATTCCTTCAGTCATTTCTGTCAAAGGACTTCTAA 1848 0.4048 MILLFSPYITHSYYLIFTLVSSLHIILLPSHLISPYYKFKVQTQPFLHFLPPQFMRTSSFTDMLSNNNSNMTLEDHNFGTSSELNHQVGLDVPKFKSVQPPSLPLSPSSISPSSYLAFSSGFSPSEFLNSPLFLSSPNIFASPTTEAFAGESFNWKNSSGEEQQKENEKNYSDFSFQTQAKPAPVFQSSSNMFQVIFVLLEQQEPVKKHDIWKFNEPTKKTDFSSTKSEYPSTQSFSSEMAPSKPEIQNNSVSGSGQFNYTNASQSVREQRRSEDGFNWRKYGQKQVKGSENPRSYYKCTHLNCSMRKKVERSLDGQITEIVYKGNHNHPKPQSTRRCSSQPIHQPSSSCTNSGISDQSVVTLGNPQMEPVSIQEDSSASVGEEDYEQTSQTTYSGGDGDDLGPEAKRWKGDNEYDGYSASDSRTVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHIERAAHDIKAVITTYEGKHNHDIPAARGSAGYNMNRNSLNSNTSNVPAPIRPSAVNRYSSSSSLTSSLYNTRLPTTGNQESFPLDLLQSPGNFGYSALGRSMGSYTNHAQYSDAAYSKAKEERNDDSFLQSFLSKDF. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01427 615 Gene3D WRKY domain 259 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g01427 615 SUPERFAMILY WRKY DNA-binding domain 269 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g01427 615 ProSiteProfiles WRKY domain profile. 437 502 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01427 615 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 133 521 IPR044810 GO:0003700
Seca1g01427 615 SMART WRKY_cls 442 501 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01427 615 SMART WRKY_cls 273 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01427 615 FunFam WRKY transcription factor 33 429 495 - -
Seca1g01427 615 MobiDBLite consensus disorder prediction 224 267 - -
Seca1g01427 615 FunFam WRKY transcription factor 262 333 - -
Seca1g01427 615 SUPERFAMILY WRKY DNA-binding domain 434 502 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g01427 615 ProSiteProfiles WRKY domain profile. 268 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01427 615 MobiDBLite consensus disorder prediction 323 422 - -
Seca1g01427 615 MobiDBLite consensus disorder prediction 401 422 - -
Seca1g01427 615 Pfam WRKY DNA -binding domain 443 499 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01427 615 Pfam WRKY DNA -binding domain 274 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01427 615 Gene3D WRKY domain 429 495 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g01427 615 MobiDBLite consensus disorder prediction 222 292 - -
Seca1g01427 615 MobiDBLite consensus disorder prediction 328 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01427 Seca-Chr1 21902952 21906138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01427 90 611 WRKY Transcription Factor Family AT2G38470 45.185 4.31e-114 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g01427 WRKY 3.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01427 K13424 - gmx:100776837 830.861