Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01387 ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCAGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTATAGCGAAACTGATTGCAAAAGAGGGTAAATCGGCAACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTTGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAAAGCCGAATCTAAATGTTGGCTAGGTAATCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCTCATGAGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTGCACCCTCACACGTGCAACCTAGTTTGCCTGTGATTGCGGGGATCCCCGTCGCAGGATGGGTAGAAAAGGCCCTATACGGCGCTCAAACCAATCCAAATCCTCGGGTGTGA 525 0.4629 MPLGTAIHNIEITLRKGGQLARAAGAIAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGKAESKCWLGNRPVVRGVVMNPVDHPHEGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRAPSHVQPSLPVIAGIPVAGWVEKALYGAQTNPNPRV. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01387 174 MobiDBLite consensus disorder prediction 93 124 - -
Seca1g01387 174 Gene3D - 1 62 IPR014722 -
Seca1g01387 174 SMART Ribosomal_L2_C_2 1 119 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca1g01387 174 NCBIfam 50S ribosomal protein L2 1 139 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Seca1g01387 174 SUPERFAMILY Translation proteins SH3-like domain 1 138 IPR008991 -
Seca1g01387 174 Gene3D Ribosomal protein L2, domain 3 63 140 IPR014726 -
Seca1g01387 174 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Seca1g01387 174 FunFam 50S ribosomal protein L2 62 142 - -
Seca1g01387 174 PANTHER RIBOSOMAL PROTEIN L2 1 142 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca1g01387 174 Pfam Ribosomal Proteins L2, C-terminal domain 1 117 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca1g01387 174 FunFam 50S ribosomal protein L2 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01387 Seca-Chr1 21047791 21048315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01387 1 101 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 41.964 1.35e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01387 K02886 - ghi:121226617 243.817