Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01346 ATGGCAGATCTTGCTAGTCATGGGATTCTTGAGCGTGATATTGAGCAAGCACTCATTGCTTTAAAGAAAGGGACTCAATTAATAAAGTATAGTCGAAAGGCCAAGCCAAAAGTTTGCCCATTCAGACTCTCCCTGGATGAAACGACATTGATTTGGATTTCTCATAAAAAGGAAAGGAATTTGAAATTATCTTCAGTTTCACGTATTATTCCGGGACAAAGAACTGCTGTCTTTAGAAGATATTTACAACCAGAAAAAGATTATCTTTCATTTTCACTTGTTTATAATAAAGGGGAGCGGACACTTGATCTGATATGCAAGGACAAAGCTGAGGCAGAGGTGTGGTTTGCAGGCCTTAAGACATTAATTTCTTCTGGAAGGCATAATAGACTTGCTGGAAGTGAATTATTTGATGATGGTGTTGATTTTATTTCGATTAGTCGGCCTTTTGGTGCAGCACTAGAGTTTGCTTCAAGCATTGCTCGTGGTAGGGTCTCTATTGATTTAGCTTCTAGTGAGTCTTCATTGTGTTGGGCAAGCCCAGATGTGGGGTTAGAACGTGCAAATATGCAACCAAGGACAAGTATTGGAGATGGTTTTCGTGTTAGTGTTTCAAGTGCACATAGTTGTTCAAGTGGAGGATCAGGACCTGATGACATAGAGTCACTAGGTGATGTTTACATATGGGGAGAAGTTTGGGTGGATGGTGCTTCACCTGATGCATATGGCACTACTCCAACCCCTTCCACAATAGATGTTTTGATTCCTAAGCCTTTAGAGTCAACTGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTACGTCATATGGCTCTAGTTACTAGGCAAGGAGAGGTTTTCACTTGGGGAGAGGAATCTGGTGGAAGATTAGGTCATGGAATTGATAAAGATTTTGGTCGCCCTCAACTTGTTGAGGTTCTGGCGGTTACAAATATAGAGACAGTTGCATGTGGAGAAAATCATACATGTGCTGTATCTATATCAGATGACCTTTATTCATGGGGTGATGGTGCATATAATGTTGGACTTCTTGGCCATGGCACTGATGTTAGTCATTGGATACCAAAGAGGATTAGTGGTCCTTTGGAAGGACATCAAGTTATATCTATAGCATGTGGCACATGGCATTCAGCATTAGCAACTTCCAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTATTGGGTCATGGAAATAGAGAGAGTGTGCCTTATCCTAAGGAAGTACAGTTATTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACAGCAGCTATTGTAGAGGTTATTTTTCAGTCTGGTTCAAGTGTTTCATCTAGAAAGCTTTTCACTTGGGGAGATGGTGATAAATATCGTTTGGGACATGGAAACAAGGAAACATATCTTCAACCTACTTGTGTCTCTGCATTGATTGAATATAATTTCCACCAAATAGCTTGTGGACATACTATGACTGTTGCCCTTACTACATCTGGTCATGTGTTTACTGTTGGAGGCACTGAAAATGGTCAACTTGGAAATCCTTTATCTGATGGTAAAATTCCTATCTTAGTACAAGACAAGTTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGGGCCCATCATGTTTCTGCCTTAACATCAAGAAGTGAACTGTATACTTGGGGGAAAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAGGATAGAAAATCTCCAACATTGGTGGAAGCATTGAAAGATAGGCATGTGAAAAATATATCATGTGGATCAAACTTCACATCTTGTATATGTATCCATAAATGGGTCTCTGGAGTTGACCAATCTGCTTGTACTGGTTGCAGACAACCATTTGGTTTTACAAGAAAAAGGCATAATTGTTATAATTGTGGATTAGTACATTGTCATGGTTGTAGTTCAAGAAAGGTATTGAAAGCAGCATTGGCTCCAACACCTGGAAAACCTCATCGTGTGTGTGATTCTTGTTACAATAAACTTAAAGCTGTTGAGGCAGGTACAGCTACTTCCAATTTTAATAGAAAAGTCACTACCCAACCTCGTAGTTCCATAGATGGAAAGGAAAGATTATTTGGTCAAGGAGAAATAAGATCTTCAAGAATTTTTCTGTCTTCTATGGCAGAACCACTAAAATTCCTTGAGATGAGCACTAATAATAAGCATGGAAACAAGTATGATTATTCTTCCATGGTTCCTACTTCTCAAGTTCCATCACTTTTACAATTGAAAGATATCTCCATTCAAAATGTTCTGAAGCCTGTTATTCCTCCAAGTCCACCACCAACTCCACCTCTTAATTCAAGACCAACATCCCCTTATCCAAGAAGGCCAAGCCCACCACGTTCTGGAACTCCTGGATTTTCTAGAAGTCTTATTGATAGTTTGAGGAAGACTAATGAGATTTTGAACCAAGAAGTCTCAAAATTACAGAACCAAATTCGAAGTTTGAAGCAGAAAAGTGACATGGAAATTCAGAAGCTTCAGAAAAACATTAAGGAAGGTAACTTGTTAGCTACAAAGGAATCATCTAAGCAGAAAGCAGCGAAAGAATTTTTTGACTCCATGATAGATCAGTTGAAGGAAATAGCAGATAAGTTACCACCAGAAGTTTCAGATACCGAAAATTTCAAAACCATGCTTACTCGAGCTGAAGATTTTCTAAAAGAACATTTAGAATCTAAAACATCTTCCTCACCATCAAACTCGGAATGTCAGCAACAAAATGCACCTGCTTTAAATAGTTCCTCTTCTAAACTGCAAGAACATAGAATAGAAGAAACTAATGAAGCTGCAGGAGTTGACTCATCTCAAGATGGCGGGAATGTCCTTCAAGAAAGTGATAAATCATCGTTATCTAATAATGAAGCAGTAGTGCATCCACAAAGCTCTGAAAATGATTCAAAATCACTAGAGTCTTCAAGATCAAGGAGAGAAGGAGAGACACAAGTCATTGAACAATTTGAACCTGGTGTTTATGTGACACTAATAGTAAAGCCTGGTGGTATCAAAGTTTTCAAACGAGTGAGATTCAGTAAACGAAGATTCCATGAACATCAAGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGCTTAGGAAATATAGTCCTCAAGCTACAAATCCCGAAAGCACAGTGTCTGGCATCCCACCACCTAGTGATGAAAATTGTGAGGCAGACCTTTCATAA 3231 0.39 MADLASHGILERDIEQALIALKKGTQLIKYSRKAKPKVCPFRLSLDETTLIWISHKKERNLKLSSVSRIIPGQRTAVFRRYLQPEKDYLSFSLVYNKGERTLDLICKDKAEAEVWFAGLKTLISSGRHNRLAGSELFDDGVDFISISRPFGAALEFASSIARGRVSIDLASSESSLCWASPDVGLERANMQPRTSIGDGFRVSVSSAHSCSSGGSGPDDIESLGDVYIWGEVWVDGASPDAYGTTPTPSTIDVLIPKPLESTVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGIDKDFGRPQLVEVLAVTNIETVACGENHTCAVSISDDLYSWGDGAYNVGLLGHGTDVSHWIPKRISGPLEGHQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVPYPKEVQLLSGLKTIKVACGVWHTAAIVEVIFQSGSSVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHVFTVGGTENGQLGNPLSDGKIPILVQDKLVGEFVEEISCGAHHVSALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVEALKDRHVKNISCGSNFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEAGTATSNFNRKVTTQPRSSIDGKERLFGQGEIRSSRIFLSSMAEPLKFLEMSTNNKHGNKYDYSSMVPTSQVPSLLQLKDISIQNVLKPVIPPSPPPTPPLNSRPTSPYPRRPSPPRSGTPGFSRSLIDSLRKTNEILNQEVSKLQNQIRSLKQKSDMEIQKLQKNIKEGNLLATKESSKQKAAKEFFDSMIDQLKEIADKLPPEVSDTENFKTMLTRAEDFLKEHLESKTSSSPSNSECQQQNAPALNSSSSKLQEHRIEETNEAAGVDSSQDGGNVLQESDKSSLSNNEAVVHPQSSENDSKSLESSRSRREGETQVIEQFEPGVYVTLIVKPGGIKVFKRVRFSKRRFHEHQAEEWWNKNKDRVLRKYSPQATNPESTVSGIPPPSDENCEADLS. 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01346 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Seca1g01346 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
Seca1g01346 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 681 IPR013083 -
Seca1g01346 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Seca1g01346 1076 MobiDBLite consensus disorder prediction 904 996 - -
Seca1g01346 1076 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Seca1g01346 1076 PRINTS Chromosome condensation regulator RCC1 signature 494 512 IPR000408 -
Seca1g01346 1076 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Seca1g01346 1076 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Seca1g01346 1076 PRINTS Chromosome condensation regulator RCC1 signature 552 573 IPR000408 -
Seca1g01346 1076 PRINTS Chromosome condensation regulator RCC1 signature 393 407 IPR000408 -
Seca1g01346 1076 MobiDBLite consensus disorder prediction 944 982 - -
Seca1g01346 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 455 501 IPR000408 -
Seca1g01346 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 504 553 IPR000408 -
Seca1g01346 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 284 332 IPR000408 -
Seca1g01346 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 390 439 IPR000408 -
Seca1g01346 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 558 605 IPR000408 -
Seca1g01346 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 337 386 IPR000408 -
Seca1g01346 1076 SUPERFAMILY FYVE/PHD zinc finger 609 678 IPR011011 -
Seca1g01346 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 453 504 IPR000408 -
Seca1g01346 1076 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Seca1g01346 1076 Coils Coil 806 840 - -
Seca1g01346 1076 SUPERFAMILY PH domain-like 13 123 - -
Seca1g01346 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 390 IPR000408 -
Seca1g01346 1076 FunFam PH, RCC1 and FYVE domains-containing protein 1 195 444 - -
Seca1g01346 1076 MobiDBLite consensus disorder prediction 767 795 - -
Seca1g01346 1076 MobiDBLite consensus disorder prediction 1051 1065 - -
Seca1g01346 1076 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Seca1g01346 1076 MobiDBLite consensus disorder prediction 1049 1076 - -
Seca1g01346 1076 MobiDBLite consensus disorder prediction 907 932 - -
Seca1g01346 1076 CDD FYVE_like_SF 618 671 - -
Seca1g01346 1076 CDD PH_PLC_plant-like 12 124 - -
Seca1g01346 1076 SUPERFAMILY RCC1/BLIP-II 223 610 IPR009091 -
Seca1g01346 1076 Gene3D - 12 130 IPR011993 -
Seca1g01346 1076 Pfam Transcription factor BRX N-terminal domain 855 890 IPR027988 -
Seca1g01346 1076 Gene3D - 200 449 IPR009091 -
Seca1g01346 1076 Gene3D - 450 621 IPR009091 -
Seca1g01346 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 335 IPR000408 -
Seca1g01346 1076 ProSiteProfiles BRX domain profile. 995 1050 IPR013591 -
Seca1g01346 1076 MobiDBLite consensus disorder prediction 765 804 - -
Seca1g01346 1076 Pfam FYVE zinc finger 609 675 IPR000306 GO:0046872
Seca1g01346 1076 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 865 - -
Seca1g01346 1076 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 613 675 IPR017455 -
Seca1g01346 1076 Pfam Transcription factor regulating root and shoot growth via Pin3 995 1049 IPR013591 -
Seca1g01346 1076 SMART fyve_4 607 676 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01346 Seca-Chr1 20440041 20446923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01346 992 1074 Major Intrinsic Protein MIP AT1G31880 33.735 3.62e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01346 - - gmx:100779684 1610.89