Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01339 ATGGGTTCAAAGGAACGAAGAAGAGTGGCTCTTCAACAACTTCGACATGTCACAAACTCTAGTGCTTTGAACAAAGCCTCAATTATTGTGGAGGCTTCCAAATACATACAAGAGTTGAAGCAGAAAGTGGAGGGATTGAACTCGGAGCTAGGAATCGCTGAGTCATCAACTACTACTCAAATCGATGAACTACCTATGCAGGTAAGTGTGAAAACCCTAAAAAGGGGTTTCCTCATTAATGTGTTTTTAGAAAAGAATTGCCCTGGTGTGCTTGTCTCAATACTTGAAGCCTTTGAAGAACTTGGACTTGATGTGCTAGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTAGGAGGAGAAAGTCACAAGAACCACAGTGTCGACGCGCATGTGGTGAAGCAAGCAGTGTTGAGAGCAATCAATAACACGGACTAA 447 0.4295 MGSKERRRVALQQLRHVTNSSALNKASIIVEASKYIQELKQKVEGLNSELGIAESSTTTQIDELPMQVSVKTLKRGFLINVFLEKNCPGVLVSILEAFEELGLDVLDARVSCEDTFQLEAVGGESHKNHSVDAHVVKQAVLRAINNTD. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01339 148 ProSiteProfiles ACT domain profile. 79 148 IPR002912 -
Seca1g01339 148 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 54 IPR036638 GO:0046983
Seca1g01339 148 Coils Coil 29 56 - -
Seca1g01339 148 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01339 Seca-Chr1 20035759 20038047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01339 21 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 27.907 4.11e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01339 - - gmx:100527466 229.18