Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01335 ATGGCTCTTGTGAATGGACCAATTGACATGGTTAGGAACATCTGTGGAGTGAAAGATTCATGGAGATTGAAAGTGAGGGTTGTCCGTCTCTGGAAAAGTTGCTCTAAAAACGATCCTAAGAAAGTTTTCTCTTTGGAGATGGTTTTGGTGGATGCTGAGGGTGCAAGGATACAGGCAAGTATCCGTAAACCAATGATCCGCAAATTTGCCAATGTTGTTGTTGAGGGAGAGGTTTACAAGATGATTCACTTTGCTGTTGTGAAGAACTTGGGTAACTTCCGTGCCACCAAGCATGAGTTCAAGCTAATTTTCAACAGTAGGACAACTGTCTTTCGTGCTGAAAGCCAACTCATTCCAGAGTTTGGTTTGTCATTGTCATCCTCTGAGGATATAAGGAAAACCAAGGGGGAATCTGAATATTTGTATGACATGATGGGTTTACTTACCGCTGTCTCTGCTGAGAAAAACATTGTTAAAGATGGGAAAACAACTCGATTGATTGTGCTTGAGCTCACAGATGATAAGTTAATATCTTTCCTTTTGTTCTTATTAAATATTTATTATTACTTTCTTTAG 576 0.3941 MALVNGPIDMVRNICGVKDSWRLKVRVVRLWKSCSKNDPKKVFSLEMVLVDAEGARIQASIRKPMIRKFANVVVEGEVYKMIHFAVVKNLGNFRATKHEFKLIFNSRTTVFRAESQLIPEFGLSLSSSEDIRKTKGESEYLYDMMGLLTAVSAEKNIVKDGKTTRLIVLELTDDKLISFLLFLLNIYYYFL. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01335 191 SUPERFAMILY Nucleic acid-binding proteins 12 114 IPR012340 -
Seca1g01335 191 Gene3D - 7 114 IPR012340 -
Seca1g01335 191 Pfam Domain of unknown function DUF223 46 115 IPR003871 -
Seca1g01335 191 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01335 Seca-Chr1 19953164 19953972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01335 21 174 Core DNA Replication Machinery Family AT2G06510 27.778 3.07e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01335 - - lja:Lj0g3v0341019.1 182.185