Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01325 ATGTCCAAGCCACCCTTCGCCTTTGATGCCCTCATGTCCGGCGCCCGCGCCGCCGCCGCCAAGAAGAAGCAACAGCCATCCTCATCCCCCAGCCAAAACCCTAACAACCTCAAAACCCCCGAAACCGTCCAACAACCCAACATATCACCGGATACCGTTGAAACTGTTCAACAGCTCAACAAATCACCGGAAACTGTTGAAACCGTTCAACAGCCCAACAAACCATCTCAGGAAACCGCCAAGGCTGAACCTCCGAACAAGATTAGCAAAGTGTCTTTTTCCCGGGAGATAATCGCTAAGCTGAAGGAGCGGGTTCCGCGGCTGAAGAAGAAGCCCTCAGAGTTCGATCCTAGCTCGGTTACGTGTTGGGAGAAAGGCCAACCCGTGCCCTTCTTGTTCCTCTCCTTGGCGTTCGACATGATCGCTGAGGAGACTGGGCGAATTGTGATTACGGACATTGTGTGCAACCTGTTGAGGACTGTGATTCACGCCACTCCGGAGGATCTCGTGCCGGTTGTTTATCTCTCAGCGAACAGGATTGCTCCAGCGCACGAAGGGTTGGAATTGGGAATCGGAGACGCTTCCATTATCAAGGCACTTGCCGAGGCTTGTGGAAGGACTGAGTCGCAGATTAAGAATCAGTACAAGGAGAAAGGTGACTTGGGTTTAGTTGCCAAAGCGAGCCGTTCGTCTCAGTCTATGATGCGGAAGCCTGATGCATTGACTATTAGGAAGGTTTTCAACACCTTTCGCCTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGATATGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCGAAACCACCTCCTGAAATTCAATCTCCTTTAGAAGAGGCTGCAAAGATTGTTAATCAAGTCTTTTCTGTTCTTCCTGACTATGACAAAATAGTATCTTCACTGCTTAAGGATGGTGTGTGGATACTTCCAAAGACATGTAATTTTACTCCTGGTGTTCCAGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTCTCTGAAGTTCTAAATAAATTCCAGGATGTTGAGTTTACCTGTGAATACAAATATGATGGGGAGCGTGCTCAGATACATTACATGGAGAATGGCTCAGTTGAGATTTACAGTAGAAATGCGGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAACTGGTTGCATATGATCGTGCAAAACAGAAAATCCTTCCTTTCCAGGTGCTTAGTACCCGGGCTCGCAAAAATGTAACTATGAGTGACATAAAAGTTGATGTTTGTGTCTTTGCTTTTGATTTGCTGTATCTTAACGGCCAAGCACTTCTCCAGGAAAACCTGAAAATCCGTAGGGAGAATCTCTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACAACAATAACATCAAATGATGTTGAGGAAATACAAAAATTTCTTGACAAAGCTGTTGATGCAAGTTGTGAAGGATTGATTATTAAAACATTAAATGAAGATGCCACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAGCTGAAAAAAGATTATCTGGAAAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGCACAGGAGTCTATGGTGCCTCTCTCCTTGCTTGCTATGACAACAACAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACCGGATTCTCTGAAGAAATGCTTGAAGAACGTTCTACTAGCCTTCGCGCTAAAGTGATTCCCAAGCCAAAGGCATACTATCGATATGCCGAAACAATCAATCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGACTTGACCATTAGCCCCATTCACCGTGCTGCAGTGGGCATTGTAGATTCGGATAAGGGCATATCTCTTCGATTTCCACGTCTACTTCGAGTTCGGCCTGATAAAGCTCCTGAACAGGCCTCATCGTCTGAGCAGGTTGCTGAAATGTATAATGCTCAAAAACACAATCACACAAACAACCAAGATGACAATGATGATGATTGA 2235 0.447 MSKPPFAFDALMSGARAAAAKKKQQPSSSPSQNPNNLKTPETVQQPNISPDTVETVQQLNKSPETVETVQQPNKPSQETAKAEPPNKISKVSFSREIIAKLKERVPRLKKKPSEFDPSSVTCWEKGQPVPFLFLSLAFDMIAEETGRIVITDIVCNLLRTVIHATPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTESQIKNQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIQSPLEEAAKIVNQVFSVLPDYDKIVSSLLKDGVWILPKTCNFTPGVPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAVSRLKKSTVSSFVLDCELVAYDRAKQKILPFQVLSTRARKNVTMSDIKVDVCVFAFDLLYLNGQALLQENLKIRRENLYASFEEESGFLQFATTITSNDVEEIQKFLDKAVDASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGASLLACYDNNNEEFQSICKIGTGFSEEMLEERSTSLRAKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPIHRAAVGIVDSDKGISLRFPRLLRVRPDKAPEQASSSEQVAEMYNAQKHNHTNNQDDNDDD. 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01325 744 CDD Adenylation_DNA_ligase_I_Euk 361 579 - -
Seca1g01325 744 MobiDBLite consensus disorder prediction 22 83 - -
Seca1g01325 744 FunFam DNA ligase 581 740 - -
Seca1g01325 744 Gene3D DNA ligase/mRNA capping enzyme 401 526 - -
Seca1g01325 744 MobiDBLite consensus disorder prediction 710 744 - -
Seca1g01325 744 CDD OBF_DNA_ligase_I 584 729 - -
Seca1g01325 744 FunFam DNA ligase 107 374 - -
Seca1g01325 744 Pfam ATP dependent DNA ligase C terminal region 601 712 IPR012309 GO:0003910|GO:0006281|GO:0006310
Seca1g01325 744 ProSiteProfiles ATP-dependent DNA ligase family profile. 478 614 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca1g01325 744 NCBIfam ATP-dependent DNA ligase 188 727 IPR000977 GO:0003910|GO:0005524|GO:0071897
Seca1g01325 744 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 364 582 - -
Seca1g01325 744 Gene3D - 382 580 - -
Seca1g01325 744 MobiDBLite consensus disorder prediction 715 734 - -
Seca1g01325 744 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 396 404 IPR016059 GO:0003909
Seca1g01325 744 Gene3D - 581 743 IPR012340 -
Seca1g01325 744 Pfam DNA ligase N terminus 130 305 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca1g01325 744 Gene3D - 107 374 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca1g01325 744 MobiDBLite consensus disorder prediction 1 87 - -
Seca1g01325 744 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 112 362 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca1g01325 744 SUPERFAMILY Nucleic acid-binding proteins 584 730 IPR012340 -
Seca1g01325 744 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 25 744 - -
Seca1g01325 744 ProSitePatterns ATP-dependent DNA ligase signature 2. 550 576 IPR016059 GO:0003909
Seca1g01325 744 FunFam DNA ligase 372 578 - -
Seca1g01325 744 Pfam ATP dependent DNA ligase domain 372 576 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01325 Seca-Chr1 19650430 19660914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01325 2 744 Core DNA Replication Machinery Family AT1G08130 68.683 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01325 K10747 - gmx:100783155 1148.65