Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01323 ATGCAAAAAGTGCTACCAGAAATGGAACAGAAGGGAAGTGTGCTTATGCAAAGATATGAACTAGGGAGATTATTAGGCCAAGGAACCTTTGCGAAGGTCTACCATGCTAGGAACCTTAAAACTGGCATGAGTGTGGCAATTAAGGTAGTTGACAAAGAAAAGATTTTGAAAGTTGGAATGATTGATCAGATTAAGCGTGAAATTTCAGTGATGAGATTAGTCAGGCATCCACATGTGATTGAGCTATATGAGGTAATGGCTAGTAAAACCAAAATTTACTTTGTCATGGAGTATGCAAAAGGTGGTGAGCTCTTCAACAAGATAGCCAAAGGAAGGCTCAAGATGGATGTTGCTAGGAGATATTTTCAGCAACTAATTAGTGCAGTTGATTACTGCCATGGCAGGGGTGTGTGTCATCGAGATTTAAAACCTGAAAATCTACTATTGGATGATAATGAGAATTTGAAGGTCTCAGATTTTGGGTTGAGCACCCTTTCTGAATCTAAGTGCCAAGATGGATTACTCCATACTACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAAGGGTTATGATGGGTGCAAAGCTGATATATGGTCTTGTGGGGTAATCTTGTATGCTCTATTGGCTGGTTATCTTCCATTCCATGATTCAAATCTGATGGAGATGTACAGAAAAATTGCTAGGGGGGAATTCAAATTTCCTAAATGGTTTCCACTTGAGGTTCGCCGGTTATTGTCCAAAATATTGGATCCAAACCCAAAGACCAGGATATCAATAGCCAAGATTATGCAAAATTCTTGGTTTAAAAAGGGGTTGGAGAAGCCAGTTATTGTTGAGACCAGAAACAAAGAAGAAGCTCCTCTGGATGCTGATGGAGTCCTTGAAGTGAGTGAAAATGTTGGTCCTATTGCAGATTCAAAGCAAGAACAGGCAAAGCTTTGTAATTTAAATGCTTTTGATATCATCTCCTTCTCAACTGGCTTTGATTTATCTGGTTTGTTTGAGGACACAGTTCATAAGAAAGAGATGAGGTTTACATCTAACAAGCCTGCCTCAACTATAATCTCAAAGTTGGAAGAAATTTGCAAGTGTTTTCACTTGAAAATAAGGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTCCAATGAAGGGAGAAAAGGGACCCTGGGAATTGATGCTGAGATTTTTGAGATTACCCCACACTTCCATCTGGTGGAATTTAAAAAGTCCAATGGTGATACAGTGGAGTACCAGCAGCTTCTGAAGCAGGACATTAGACCAGCACTTAAGGACATTGTTTGGGCCTGGCAAGGAGAACAACCACAGCAACTCCAACATGAAGAAGTAGTGCAGTAA 1374 0.4017 MQKVLPEMEQKGSVLMQRYELGRLLGQGTFAKVYHARNLKTGMSVAIKVVDKEKILKVGMIDQIKREISVMRLVRHPHVIELYEVMASKTKIYFVMEYAKGGELFNKIAKGRLKMDVARRYFQQLISAVDYCHGRGVCHRDLKPENLLLDDNENLKVSDFGLSTLSESKCQDGLLHTTCGTPAYVAPEVINRKGYDGCKADIWSCGVILYALLAGYLPFHDSNLMEMYRKIARGEFKFPKWFPLEVRRLLSKILDPNPKTRISIAKIMQNSWFKKGLEKPVIVETRNKEEAPLDADGVLEVSENVGPIADSKQEQAKLCNLNAFDIISFSTGFDLSGLFEDTVHKKEMRFTSNKPASTIISKLEEICKCFHLKIRKKDGGLFKLEGSNEGRKGTLGIDAEIFEITPHFHLVEFKKSNGDTVEYQQLLKQDIRPALKDIVWAWQGEQPQQLQHEEVVQ. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01323 457 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Seca1g01323 457 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01323 457 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Seca1g01323 457 SUPERFAMILY Protein kinase-like (PK-like) 15 283 IPR011009 -
Seca1g01323 457 Gene3D Phosphorylase Kinase; domain 1 8 98 - -
Seca1g01323 457 Gene3D Kinase associated domain 1, KA1 317 441 - -
Seca1g01323 457 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 436 - -
Seca1g01323 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Seca1g01323 457 CDD CIPK_C 322 436 - -
Seca1g01323 457 FunFam Non-specific serine/threonine protein kinase 9 305 - -
Seca1g01323 457 FunFam Non-specific serine/threonine protein kinase 316 440 - -
Seca1g01323 457 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01323 457 Pfam NAF domain 320 376 IPR004041 GO:0007165
Seca1g01323 457 Gene3D Transferase(Phosphotransferase) domain 1 99 304 - -
Seca1g01323 457 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01323 457 CDD STKc_SnRK3 18 272 - -
Seca1g01323 457 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01323 Seca-Chr1 19524264 19527987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01323 8 448 CBL-interacting serine-threonine protein kinases AT5G58380 65.934 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca1g01323 Pkinase 9.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01323 K07198 - gmx:100803787 763.837