Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01316 ATGAGAGAGGCACAGAACGACACCGTTGTGGCAGAAGTAGCAGAAACTGAGGCTAAAACGACGAAGGATGAGTTGCCACGCGACGTCGTTTTGTTCGGGAAATACGAACTGCAAAGATTGCTTGGCGTTGGCGCGTCGGCGAAGGTGTACCACGCGACGAACGTTGACACAGGACAGAGCGTGGCAATGAAGGCAGTGAGCAAGCACAAGGTTTTCTCCGGCGGTTTCGCGGCCAACGTGGAACGTGAGATCTCAATCATGCGCCGTCTTCACCACAAGAACATCGTCGAACTCTTCGAGGTCCTCGCCACCAAGACGAAGATTTACTTCGTCGTTGAGTTCGCCGCCGGCGGAGAGCTCTTCCAGGAGGTTGCCGGCAAGGGACGATTAACCGAAGACCACGCCAGGAGATACTTCCGGCAACTCATCTCCGCTGTCAATCACTGCCACTCACGCGGCGTTTTCCACCGCGACCTGAAGCTCGACAACCTCTTGCTCGACGAGAACGGCGACCTGAAGGTATCGGATTTCGGGTTAAGCGCCGTGAAGGAGCAGATCCGACCCGACGGCATGCTCCACACCGTTTGCGGAACCCCTTCCTACGTGGCACCTGAGATTCTCGCGAAAAAGGGCTACGACGGAGCGAAAGTGGACATTTGGTCGTGCGGCGTCGTTTTATTCGCCCTCACGGCTGGGTATTTGCCCTTCAATGATTACAATATAACCGTCCTGTACCGCAAGATTTACCGTGGTCAATTTCGCTTCCCGAAATGGACGTCCCCTGATCTGAGGAAGCTCTTATCACGTTTATTGGATACGAATCCCAAGACGAGGATCACCGTTGATGAGATTTTCCAAGACCCGTGGTTCAATGCGGGTGGATATCAACCCGATCGGGTTTTATTTAAGGAGCGGGAGTTTTTGGAGGAGACTCGAACCGGGTTCAAGTCTTTGAACGCGTTTGATTTGATATCGTTCTCAACCGGGTTGGACATGTCGGGTCTGTTTTCGGGCCCAATTGTGTCGGATTCAGTGGAACGAATCGTTTCGAGGGAGGGTCCGGAGAGGATTATGGAGAGGGTGGAGGAGGTGGCCAAAGGGGAAAGGGTGGTGGTGAAGAGAAAGGAGAATAGTGCAAAGGTGGAAGGGCAGGATGGTCATTTTATTGCTGTTTTGGTGGTTTACCGGTTAACGGATGAGTTGGTTGTGATTGAAGTGAAGAGGCGCCAAAGAGGAGGGGAATGTGGCGCGGAATTTTGGAAAGATAAATTGCGACCTCTGCTTCATGAATTGGCTCATAAACAGGAAGTACCGGTCTCTCGGTGA 1326 0.5279 MREAQNDTVVAEVAETEAKTTKDELPRDVVLFGKYELQRLLGVGASAKVYHATNVDTGQSVAMKAVSKHKVFSGGFAANVEREISIMRRLHHKNIVELFEVLATKTKIYFVVEFAAGGELFQEVAGKGRLTEDHARRYFRQLISAVNHCHSRGVFHRDLKLDNLLLDENGDLKVSDFGLSAVKEQIRPDGMLHTVCGTPSYVAPEILAKKGYDGAKVDIWSCGVVLFALTAGYLPFNDYNITVLYRKIYRGQFRFPKWTSPDLRKLLSRLLDTNPKTRITVDEIFQDPWFNAGGYQPDRVLFKEREFLEETRTGFKSLNAFDLISFSTGLDMSGLFSGPIVSDSVERIVSREGPERIMERVEEVAKGERVVVKRKENSAKVEGQDGHFIAVLVVYRLTDELVVIEVKRRQRGGECGAEFWKDKLRPLLHELAHKQEVPVSR. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01316 441 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
Seca1g01316 441 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 26 409 - -
Seca1g01316 441 Pfam NAF domain 316 373 IPR004041 GO:0007165
Seca1g01316 441 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01316 441 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Seca1g01316 441 Gene3D Transferase(Phosphotransferase) domain 1 28 317 - -
Seca1g01316 441 ProSiteProfiles Protein kinase domain profile. 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01316 441 Gene3D Kinase associated domain 1, KA1 318 434 - -
Seca1g01316 441 SUPERFAMILY Protein kinase-like (PK-like) 31 298 IPR011009 -
Seca1g01316 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Seca1g01316 441 CDD CIPK_C 319 428 - -
Seca1g01316 441 FunFam Non-specific serine/threonine protein kinase 115 297 - -
Seca1g01316 441 FunFam Aurora kinase A 28 118 - -
Seca1g01316 441 SMART serkin_6 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01316 Seca-Chr1 19383596 19384921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01316 30 425 CBL-interacting serine-threonine protein kinases AT2G30360 58.025 3.99e-171 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca1g01316 Pkinase 2.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01316 - K12761 gmx:100788245 639.802