Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01311 ATGGGCAATCACAGGTTCAAATTTTCAGATATGATGCCAAATGCCTGGTTTTACAAGCTCAGAGACATGGGAAGAACAAGAAAGCAAACCCCAACACAACCCAGAAACAAAAAACAATCTTTATCAGCTTCAACCACACATTCATCAAAACCAAAGCAACCCCACCAATGCAATCCCAGAAAATCTTACTACTTTACAAGAGAGCTTAACCCAAGCAATAAAATCCACACTTCACCAGCAAATAACCAAAATTTCCCTGAACCACCAAGAAAATCATCCAAACAAAGACCCAAAAGAAGAACTTTAAGGACTTCTTCTTCTTCTTCACCTAAGCTTGTAACAACCCCTTCTGTCTCTGCTAATTCTAGCTACCACAACACTCTTGAATCTGATTCCCCACCTGAAAACTCCTCATCCCCACTTGATAGCTCTGCAGAATCAGAATTCCCTGACCCAGAAATCAGAACAGACCGTGTTCTTCCCACTGATGAAACTGCTTCATGTGCCTGCAAGCTACACACCAACAACACCAATGACATCATCATTGATGTAGACAACAATTCCATAGCCAGAAAAGATGATAAGCTAGAAGGGTATGAATATGATTCCTTCTCAGACCTCATGCTTCCACCAATTGTGACCAAACCAACAAAGTTCAATGATTTACTAAACGATGCAAAGAAGAAAGAAACAAAACCCAGAAGCAGAATGGCTTCACATGAAGAACACAACATGAAAGGGTCACTGAAAGTTAAAATTGTGAAGGAAGAACAGAGGAACAACCCTGTTGCTAGAAGATTCTCTGTGAGTTCACCAGGTGTGAGGCTTAGGATAAATTCACCAAGAATTGCTAGCCGGAAAGTTCAGTCACATGGCCGGAAAAGTGTATCATCCTCCGGCGCCGGCGGCACCGGATTCAGGAGGAGTCTCTCAGATAGCTTTGCAATTGTGAAGTCTTCATTCAATCCACAGAGAGATTTCAGAGAATCAATGGTGGAGATGATTGTGCAACATAACATAAGGACATCAAAGGATTTGGAAGATCTTCTTGCTTGCTATCTTTCTCTGAATTCAGATGAGTATCATGATCTCATTATCAAAGTGTTCAAGCAAATTTGGTTTGATTTGACTGATAATAAGTAG 1143 0.4086 MGNHRFKFSDMMPNAWFYKLRDMGRTRKQTPTQPRNKKQSLSASTTHSSKPKQPHQCNPRKSYYFTRELNPSNKIHTSPANNQNFPEPPRKSSKQRPKRRTLRTSSSSSPKLVTTPSVSANSSYHNTLESDSPPENSSSPLDSSAESEFPDPEIRTDRVLPTDETASCACKLHTNNTNDIIIDVDNNSIARKDDKLEGYEYDSFSDLMLPPIVTKPTKFNDLLNDAKKKETKPRSRMASHEEHNMKGSLKVKIVKEEQRNNPVARRFSVSSPGVRLRINSPRIASRKVQSHGRKSVSSSGAGGTGFRRSLSDSFAIVKSSFNPQRDFRESMVEMIVQHNIRTSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDNK. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01311 380 Pfam Transcriptional repressor, ovate 320 376 IPR006458 -
Seca1g01311 380 ProSiteProfiles OVATE domain profile. 316 375 IPR006458 -
Seca1g01311 380 MobiDBLite consensus disorder prediction 71 161 - -
Seca1g01311 380 MobiDBLite consensus disorder prediction 281 304 - -
Seca1g01311 380 MobiDBLite consensus disorder prediction 29 59 - -
Seca1g01311 380 MobiDBLite consensus disorder prediction 71 90 - -
Seca1g01311 380 MobiDBLite consensus disorder prediction 26 59 - -
Seca1g01311 380 MobiDBLite consensus disorder prediction 102 145 - -
Seca1g01311 380 NCBIfam uncharacterized plant-specific domain TIGR01568 315 377 IPR006458 -
Seca1g01311 380 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 55 378 IPR038933 GO:0045892
Seca1g01311 380 MobiDBLite consensus disorder prediction 283 304 - -
Seca1g01311 380 Pfam DNA-binding domain 1 49 IPR025830 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01311 Seca-Chr1 19292272 19293414 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca1g01311 Ovate 8.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01311 - - aprc:113863721 506.523